3300005500: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0400 MetaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300005500
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111632 | Ga0068670
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0400 MetaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66503397
• Sequencing Scaffolds: 13
• Novel Protein Genes: 16
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F008499	Metagenome / Metatranscriptome	332	Y
F010840	Metagenome / Metatranscriptome	298	Y
F015737	Metagenome / Metatranscriptome	252	N
F021779	Metagenome / Metatranscriptome	217	N
F052283	Metagenome / Metatranscriptome	143	Y
F057401	Metagenome / Metatranscriptome	136	Y
F061617	Metagenome / Metatranscriptome	131	N
F065815	Metagenome / Metatranscriptome	127	N
F082732	Metagenome / Metatranscriptome	113	N
F093914	Metagenome / Metatranscriptome	106	Y
F098323	Metagenome / Metatranscriptome	104	Y
F101227	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068670_1004016	Not Available	1036
Ga0068670_1004747	All Organisms → cellular organisms → Bacteria	1943
Ga0068670_1006083	All Organisms → cellular organisms → Bacteria	1101
Ga0068670_1017210	Not Available	1222
Ga0068670_1017363	Not Available	541
Ga0068670_1019370	Not Available	672
Ga0068670_1021231	Not Available	660
Ga0068670_1021668	Not Available	979
Ga0068670_1088786	Not Available	526
Ga0068670_1094802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	560
Ga0068670_1102801	Not Available	590
Ga0068670_1111205	Not Available	1010
Ga0068670_1119626	Not Available	569

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068670_1004016	Ga0068670_10040162	F065815	PTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0068670_1004747	Ga0068670_10047471	F098323	MLKNKFWVLLVIFALFGFINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCDSGNGSCVVLKFRKATEDDKERYRQLTENAKKCVGSNSNNLDDRQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQNGQVKEVLATRINVKEKLLGVARATEDNFYLTVANQLA
Ga0068670_1006083	Ga0068670_10060833	F082732	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEEGADVGASFGDFLKSVAYNDTRRLRAIYKSSKALDETSGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLTLRTNAAELALPVLEQDQTPDVESSAL
Ga0068670_1017210	Ga0068670_10172102	F008499	VGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLVTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLTKQTIEALLQVVDRAAQFDRIPLLAVVLSDDVPARTASGAKVDREWVLIPLRELKRLVGKEVSYE*
Ga0068670_1017210	Ga0068670_10172103	F004307	GVKERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVISAVGREYQLTIETKPSGWYEIIHVAPVRRARRKEVMSGNEEVPF*
Ga0068670_1017363	Ga0068670_10173631	F008499	MKSRSKSEPRWKRKERDAVRALQAIFGRVSDPSLARLLTSTGRAGHLTRFGVDGFVGNNPGFVVEVKARKRMLTKPAIDALLQTVDRAARFERIPLFVVVFGDDVPARTENGARVDREWVMMPRRVLDELVGKE
Ga0068670_1019370	Ga0068670_10193702	F010840	MNLPFDRPLNKVTNGALAAALVVVVAWALREFVGVDLPAEVQSALALIVGFGISYLVPLSAAEAEAIAQAYYRK*
Ga0068670_1019763	Ga0068670_10197632	F015737	MLLGQLYYYNKLLNSLSFPLTKEQLLHLELAGTSKLELNSLYHLSLNDLIRKLKDLFSYSYGQLLQQESLAFATQFWSNLVSATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNERIETYLHKHLTSNVLITTIEFTKFAQNAFFDSLVRKTLGVRLT*
Ga0068670_1021231	Ga0068670_10212312	F004791	MTEPATIYDVDAIRVDRGVLTIRGAAKLLNRELTAPVIARLVRNAIGDQADRFPIGALKVVYESVLPKIFEPDSAIRSRVEALMPNIATITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0068670_1021668	Ga0068670_10216681	F093914	DDVELSRPSGEAYVGGSSDYATVMVGKREPVEVTLTFLYNETTNSASNTIYDYFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPTDLS*
Ga0068670_1021668	Ga0068670_10216682	F004791	MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKVVYERVLPQIFEPDAAIRARVEGLVPNVTTITLGEYHQFLEASERGIAFPEVTQTLLAKAYGDDILNEPYAAASLLLKKIFDLVGEEGKG*
Ga0068670_1088786	Ga0068670_10887861	F057401	LEPEHLAEVWNLAPSLKAFAELLPGYSVARGWVVEGPAGYGVLGPEYDYPETLVVDIGGNLQVRALVKPGETTVRYDHGYDGSVLRFAQASVAGGLVVGAEGYKPAPRYWARVARLLIVAEEPTDSQAEAIRAALRAMVGDDPGGLEEFDRYFAMTGAEILAGPEVFQPTVP*
Ga0068670_1094802	Ga0068670_10948021	F021779	YDKDAAAINTGAGDPDAVSRQSLGYNGINLSDAKTEIFLPIAWRINAQSTCGFWRYTGLIVQNAGASNANVTVRAYNNAGALINTWNDPNPLGPFTPRGYNTRFNAGSGYGTDSAVIAALGANFDGTLRLTSTQPLVAVAESWQNCNSGSSPMTDSNITELN*
Ga0068670_1102801	Ga0068670_11028011	F052283	MNPRQKSVVVGAILGALLGALGGYLFSRGLDLPRGEEKGRSLSRRPVPPGEIVRLFISIMGVLRGIAELGERL*
Ga0068670_1111205	Ga0068670_11112051	F061617	MAKTLNALANRKKVRTRQILNQSNLYYLNNRRLSFLPKIFLGFSIVLVICGLLWYLNVFDLQTVVGQPVSHQSEQLTALDLIRQLNSNTTSQANTTDEQTANWQSLNSDKLVLLTAQNGATCALSLQPNPPENIKPIVQNQPQGWWLPSHCAVSELVAVQIVRLNSTEANKLAQAANLIQVQNLDGLDTYAIIYFNQPSKTSFDLKKYLKSLTANIFTDRFYFNTTSAHDTKKIGDWIYYLDGECTGPSSYRDPCKLWRSDRNTGTIELLKKNV
Ga0068670_1119626	Ga0068670_11196261	F101227	LKPNMTPKSVSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFYSIFPWLWQVGPVIFMYYYASQEKSKKASSS*