3300005460: Mouse cecum microbial communities from Vienna, Austria - Mucus amended microcosms incubated with D2O

Overview

Basic Information

• IMG/M Taxon OID: 3300005460
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114692 | Gp0115682 | Ga0073908
• Sample Name: Mouse cecum microbial communities from Vienna, Austria - Mucus amended microcosms incubated with D2O
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 438687249
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mouse Cecum Microbial Communities From Vienna, Austria
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Cecum → Mouse Cecum → Mouse Cecum Microbial Communities From Vienna, Austria

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Austria: Vienna
• Coordinates
  • Lat. (^o): 48.2
  • Long. (^o): 16.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F059106	Metagenome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0073908_1012466	All Organisms → cellular organisms → Bacteria	4374
Ga0073908_1106873	Not Available	639

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0073908_1012466	Ga0073908_10124665	F013656	LEKRYKEPNKLELETTINVLYEENVISIYTNKPNLQKQLCKSIGEPEKEFKKGKSILASRWCIPMSEKSKISKMMLKANIFEL*
Ga0073908_1106873	Ga0073908_11068732	F059106	MHASVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV*