3300005387: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_B MetaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300005387
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111617 | Ga0068655
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_B MetaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10897164
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.539
  • Long. (^o): -110.798
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006938	Metatranscriptome	361	N
F007225	Metagenome / Metatranscriptome	355	Y
F015874	Metatranscriptome	251	N
F021779	Metagenome / Metatranscriptome	217	N
F039156	Metatranscriptome	164	N
F077351	Metatranscriptome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068655_100823	Not Available	666
Ga0068655_104090	Not Available	662
Ga0068655_104151	Not Available	503
Ga0068655_104181	Not Available	966
Ga0068655_132164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	657

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068655_100215	Ga0068655_1002151	F006938	MLRIRVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVETLFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYTEGLVRAQDMMEKAKRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYP
Ga0068655_100823	Ga0068655_1008231	F039156	VLNPFSNTSTLIVVGAVITIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRSALTALRDATAQAHSIARELQTLQQLREEASTVITELRGLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRET
Ga0068655_103462	Ga0068655_1034621	F007225	MRKFAAITALLAVATTASFAQFGIYGATALGESTGLGGGFQGGFVNGQEFDLLIRMDVPPGVPRFPRNGGGSLAFNFNPRYIDIKVFDGETGDPITIAQAVADARVGEIVNLGRYAFPGTTIRGVTLVGAAAFGARKNADGTIGVRIAFLSTNVLVSNATHAEPFMRTGPEDDDGNRRLP
Ga0068655_104090	Ga0068655_1040901	F015874	MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLA
Ga0068655_104151	Ga0068655_1041511	F077351	MSNLRPQYGKPVGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLP
Ga0068655_104181	Ga0068655_1041811	F015874	MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLATRCNYIDPETSYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEILSSMIKREG*
Ga0068655_132164	Ga0068655_1321641	F021779	FTNRAGTVESTYSDTIAPLSSKGYNTRFGGALSIAARDNIRGLDLGGTSSTPAFVGSAQVTSSQPLICIAKQIYDKDSTAIPTGSPPSEDPKTRQSLGYNGINLSDAKTEIFLPIAWRINNQPTCNFWRYTGLIVQNAGTSNATVTVTAYTTAGAIVNTYNDPTPLTPLTPRGYNTRFGAYSTAVGSALGPNFDGVLRLTSTQPLVAVAESWQNCDSG