3300005386: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_B MetaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300005386
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111615 | Ga0068653
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_B MetaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9940483
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.539
  • Long. (^o): -110.798
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006938	Metatranscriptome	361	N
F010840	Metagenome / Metatranscriptome	298	Y
F039156	Metatranscriptome	164	N
F077351	Metatranscriptome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068653_100087	Not Available	511
Ga0068653_100284	Not Available	607
Ga0068653_102365	Not Available	554
Ga0068653_127058	All Organisms → cellular organisms → Bacteria	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068653_100087	Ga0068653_1000871	F077351	MSNLRPQYGKPVGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLPSDVDA
Ga0068653_100284	Ga0068653_1002841	F077351	MSNDRPQYGKPVGRTIRGRVKVTVKAERLEGFWRDVTRQWNRQVLNKVPGSQDLLLTEEEWLTLWRGILATRCHYIDPEREYPRYRVIVPKRCEVPLLMWEALWNFGIYRSKWGADYVITAEAEWPSQEEMSRVYAKWLNALSVYLAVLEMSRSLPSDVDAAPSFVVNVIERGGGVTVQSSYPMEDVTPRH
Ga0068653_100310	Ga0068653_1003101	F006938	GRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLR
Ga0068653_102365	Ga0068653_1023651	F039156	GAVITIGLVAVALTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVITELRGLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREEPVNE
Ga0068653_127058	Ga0068653_1270581	F010840	VNLPFSQPLDKITYGALAAATVVILAWALREFAGIDLPAEVQSALALLVGFGISYYVPLSEVE
Ga0068653_128419	Ga0068653_1284191	F006938	MLRIRVTIGRQNGLSEAELVSDEPLAPMLGTVKTGHVVDRRAAELVEELFGKEVRDRARNYTRSGATLELLYASLGKYDHGDVAWSALSDDIRARLRDAMNEAYKVFGAKGLTPKPLNEVKIEPSSPGASWRLYGRTGKRTDLDVYVEGLARAQTIMDKAKRRKQPFCELPPCLAYLRTQLAPRNSPKVRLVWGFPFEINLIEGAFADAYQEALLC