3300005377: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 3_Base_of_chrolophyll_max_130m

Overview

Basic Information

• IMG/M Taxon OID: 3300005377
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056617 | Gp0051025 | Ga0074217
• Sample Name: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 3_Base_of_chrolophyll_max_130m
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6007257
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine photic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean at depths of 10m to 4000m at the Hawaii open-ocean time-series station
• Coordinates
  • Lat. (^o): 22.45
  • Long. (^o): -158.0
  • Alt. (m): N/A
  • Depth (m): 130

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007891	Metagenome / Metatranscriptome	343	Y
F023490	Metagenome	210	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074217_10463	Not Available	792
Ga0074217_12969	Not Available	966
Ga0074217_16257	Not Available	1050

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074217_10463	Ga0074217_104632	F007891	MTLYSNFFSSAINSVETKEKEVLITYSSNIAKEYVYNCENVPEFTNNLCSVLISNELQQDGGSVGSFVSQSRRDGVLTDQ*
Ga0074217_12969	Ga0074217_129693	F023490	MILFPTHGWNTNFPISNTNSSVVYYRERPGPNFFRVFYKNVAQIRYTPKQVGAVFGVARFTPSVNELRDWCYEMVKEYGSETDKADDGYLKYIAKHGFGPEVHQDEDPTANTKMIV*
Ga0074217_16257	Ga0074217_162571	F007891	MTLYSNFFSSAIESVETKENTVFITYSSNLEKNYEYNCTNVEEFTNNLCSVLIDNELQRDTGSVGRFIQQSRRDSVLTDK*