3300005372: Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter Sample 10334

Overview

Basic Information

• IMG/M Taxon OID: 3300005372
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056601 | Gp0051600 | Ga0074246
• Sample Name: Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter Sample 10334
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1933492
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine neritic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Late winter and summer Antarctic waters
• Coordinates
  • Lat. (^o): -64.067
  • Long. (^o): -64.767
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004613	Metagenome / Metatranscriptome	431	Y
F013024	Metagenome / Metatranscriptome	275	N
F016456	Metagenome / Metatranscriptome	247	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074246_103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	14893
Ga0074246_141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	44278
Ga0074246_145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	37525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074246_103	Ga0074246_10317	F016456	MPRKPNYKDLLKKFKKRNIKNPERIATAYVKGLTAGSKKKAAKNLTGIID*
Ga0074246_141	Ga0074246_14133	F013024	MYEIKKDKLSKDFLTKKLFWLGIIGTYIIAGVMLNKLENNADYDDLILISIIPSSYYFFMLFLSYKSFKDEAIRTTILQFTIQILLLLPLMSMYMAVLLFSTKIS*
Ga0074246_145	Ga0074246_14521	F004613	MIPNVTKKLNLSAEDLKRQKNIISKLNLAKLPFDISPDRMCALNLEMARHSSAVLKYQEDKSGIKWIFSSIKKYKVFLIIFESNELGEEIYKEKISSKLPEYSYKTVAQIVDDGVKKNFFIKLDARAKTTKDLKIRNVRPSEEVIIEFINWKIDLLASLMKFKKDLIN*