3300005282: Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 version 3

Overview

Basic Information

• IMG/M Taxon OID: 3300005282
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046201 | Gp0051763 | Ga0065701
• Sample Name: Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 version 3
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 328301056
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → Fluviicola → Fluviicola taffensis	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. KYL-1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lawrence Berkeley National Laboratory, California, USA
• Coordinates
  • Lat. (^o): 37.8754404
  • Long. (^o): -122.2477251
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017253	Metagenome	242	Y
F051098	Metagenome	144	Y
F056624	Metagenome	137	Y
F063258	Metagenome / Metatranscriptome	129	Y
F087844	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0065701_1018121	Not Available	2419
Ga0065701_1035678	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	509
Ga0065701_1041173	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	6549
Ga0065701_1044292	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → Fluviicola → Fluviicola taffensis	3322
Ga0065701_1053332	Not Available	1838
Ga0065701_1089196	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. KYL-1	889
Ga0065701_1134065	Not Available	615

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065701_1018121	Ga0065701_10181211	F051098	MIITPFYYCRNCKKLYPGNKLEIANISIEKLVSAARYTLGSQDHVFRIGGKTIQLSDLHHCNAHEVGLANFIKIQIETDEKKK*
Ga0065701_1035678	Ga0065701_10356781	F017253	STLKTVKTTNVSKSDKLTANVGSYTQGRIAGDFLSSRKAARAERCPPKTTAAALDG*
Ga0065701_1041173	Ga0065701_10411734	F087844	MKKTTLLFVTAFLLLFSLNTTSAQSRNIHFFGSYDRSLGNIIASVSPSLGSIEHDEISKLRNGSVNQFEVGAFINSFGLGIIHNFYSTDATTTYQNYDMNRDGLLDNGMLGDKLSLKFTGLEILYRKAILSSRFDVLWRIALGIQSYSLDKTTVISDNNPADSYQTLTGSVFTGLIGAGFDYHINKRLSVGIETSLLPGKYKKLKDKDSDYYTYEDNVSRLSTGLKLTLTL*
Ga0065701_1044292	Ga0065701_10442921	F017253	IIGYNGRNYMQGQTAGDFLSSRKTAWAERCTPKTTAAALDG*
Ga0065701_1053332	Ga0065701_10533324	F063258	MSAFVLLGVLEWVTLSPETVRVINGPNGMPLLDVSVRGVALAVLALFALRSWNHYRREMLEELERSGQE*
Ga0065701_1089196	Ga0065701_10891962	F051098	RKLYPGNKLEIANPSIEKLVSAARYTLGSQEHIFRIGGKTIQLSDLHHCNDHEVGLANFIKIQIETDEKKK*
Ga0065701_1134065	Ga0065701_11340652	F056624	MTAPSEQLHELTARCETCREETRDKLVAFDRRLLALEIVVRGEDGRNGIKSQLNSLCLRFDAFEKKAIRWIAVGTAFPGIVVAVLGILKFIGKL*