3300005261: Freshwater pond sediment microbial communities from Midddleton WI, HA 3/4 enriched by Glucose under anaerobic conditions -HA Sample 2

Overview

Basic Information

• IMG/M Taxon OID: 3300005261
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114617 | Gp0114682 | Ga0071345
• Sample Name: Freshwater pond sediment microbial communities from Midddleton WI, HA 3/4 enriched by Glucose under anaerobic conditions -HA Sample 2
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Wisconsin, Madison
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 171093054
• Sequencing Scaffolds: 12
• Novel Protein Genes: 15
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter dehalogenans	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humic Acid And/Or Glucose Under Anaerobic Conditions
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humic Acid And/Or Glucose Under Anaerobic Conditions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → pond → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Middleton, WI
• Coordinates
  • Lat. (^o): 43.0603
  • Long. (^o): -89.5717
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007838	Metagenome / Metatranscriptome	344	Y
F014092	Metagenome / Metatranscriptome	266	Y
F014212	Metagenome	265	Y
F021450	Metagenome	219	N
F029425	Metagenome	188	Y
F043160	Metagenome / Metatranscriptome	157	N
F071750	Metagenome	122	Y
F074658	Metagenome / Metatranscriptome	119	Y
F077208	Metagenome / Metatranscriptome	117	Y
F079531	Metagenome	115	Y
F085790	Metagenome / Metatranscriptome	111	Y
F090578	Metagenome	108	Y
F095692	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0071345_1000065	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter dehalogenans	17638
Ga0071345_1000097	All Organisms → cellular organisms → Bacteria	139674
Ga0071345_1000189	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	234020
Ga0071345_1000408	All Organisms → cellular organisms → Bacteria	103845
Ga0071345_1001764	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	272908
Ga0071345_1002511	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	185554
Ga0071345_1003922	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	37443
Ga0071345_1012883	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	15800
Ga0071345_1013351	All Organisms → cellular organisms → Bacteria	11564
Ga0071345_1013536	All Organisms → cellular organisms → Bacteria	3161
Ga0071345_1016047	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	38830
Ga0071345_1112676	All Organisms → cellular organisms → Bacteria	750

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0071345_1000065	Ga0071345_10000652	F090578	MWDTNPWAPWGLIHVVRDGAPIVTETGLWFLQQRHADAVERDGTGYWLYLDQPYRAERVADRAFFQLSPSPSRRRGGG*
Ga0071345_1000097	Ga0071345_100009712	F079531	MRAFSKILVASLALAVAVPAAAQYTFTQPGQQPQPVQPMQVWNNVARVNLGVGFYNSAWYNCYYWGPYYPTCSSGSYGSYIPFLVGPQVDLNLGGMSNVSVGFTVGFGTITSNTDLCPGGVCGTQSNSVTLWEPTLDYVAKFGPPTMDTVGRFRVGGGMYIGPNSTIGGAFRIGGGASFLNANRLGIGLDIVLEGGGYNGYWVGGLQLLASPEFHF*
Ga0071345_1000189	Ga0071345_1000189159	F079531	MRNLLRIAVLSLGLAVAAPAAAQYTFTQPGQQPQPVQPMQVWNNVARVNLGVSFYNSGYYNCSYWGGYYPTYTCGSGTFVSYIPFTVGPQVDFNLGGMNNVSVGFNVLLGTATGTLYNGGFAESVSRSATLWEPTIDYVAKFAPPTEDTVGRFRVGGGMYFGPNSGLGGAFRIGGGASFLNTNRIGVGLDLVLEGGGYQGYWIGGLQLLVSPEFHF*
Ga0071345_1000408	Ga0071345_100040868	F071750	MKKVLTLLLLCSFINLIGNCQILNNPSLTVDDFASALTNASQLRNILKKHNFECSVYGETSLVTPEIMQNQLTPDLYALRSEDWEPKNQHDHSIVKVSIYEWKADHAPLPEVMRTIRVIIRRNSSYSDQTREFFESIKDKYPVKGKGYFRNSELYKAYGESYNVFTNDSKIEVRTETEKPIYSRFYIVDFDLIR*
Ga0071345_1001467	Ga0071345_100146748	F029425	LRVPRHDEIVPGAKTMTPRASADSAKDAVPVDETVRVIEDFINGIEFKCLDVGVDYKTVLALAKALN*
Ga0071345_1001764	Ga0071345_1001764168	F077208	MKIPVTLTALVLLFSGCQQAEKKIITAEFNVNRMLLSDSPFVSKSGFSVNPPVDWSKTESFNLELQNKVMSHIDNKLLAIYRSDSTNCALIISELPESNFDIIKGLLENSTIPESHDTIWTKVQSSVFKYKTYDIIQIVSQNPEMVIFKLLTHRLSELYELDYIIPRSEINLNMQSVESSIGSLN*
Ga0071345_1002511	Ga0071345_1002511162	F014092	MFSVSKLNTMFIMKKVLLVLVLFMAVIAANAQTNKSTDTKETVVRTPVMVADLQKPITDNIAKDYVGYTIKEAESVVKNDILTYHVVIVKEATTMTLVYDKDGVFVKKLPPVPEKK*
Ga0071345_1003922	Ga0071345_10039229	F043160	MAKKNFDNLKNSHLGGGLSNLIPEMNENHDSKKTKVVYKDVPKTFLMVLEDYEYLQTYSRYMAFHSNSKYPLKRSLSDAIKLLREAHPEIQ*
Ga0071345_1012883	Ga0071345_101288315	F074658	MRADSFQLIKFCGTRTDPAAETKSMGLQANARVVMVFASPSGQFYCNMTNPAHLPGPRHLDNFILTRNLHPFTGTMQKRMPTLTQTTTN*
Ga0071345_1013351	Ga0071345_101335110	F085790	MKQNHDFPPAPNPPLKSDPACIAFLSLSTSRYLGSARRLGAGVAA*
Ga0071345_1013536	Ga0071345_10135364	F085790	MQARGSNLSLKSDPACIAFRSLSSFRYHGSARRLGAGVAA*
Ga0071345_1016047	Ga0071345_101604732	F021450	MKKTISLLALLLLFSFEIQAQVTNVLNNFYTIWVKPAIPIIGGLVLIVGALANIGKVLGDSRDYRGFITSIVLYLAVYFCLVGIAAFIMAG*
Ga0071345_1016047	Ga0071345_101604734	F007838	MRTLFTFLLLLLTGEIYGQIPAGLTMVVKNPAWQAEDAAKESLEKADRIRQITTLTEQVNTQKQSLQAIRDATEKLRKINRKVANYHNLELAVVQVSDSYTRVLNSLKTISDHNCFKPSEYHMISESMMGLLSQTSYAITTLTVVLTNNFSEMSDGERLLNMNQAIKELRENLGVINSAIIEIEILDNQRMQLRTLNYINSIFK*
Ga0071345_1016047	Ga0071345_101604739	F014212	MKNKLVLALLLISASTSAQLIHVAGSKAIGLDAGYVKNGSNVSSRITLYKNNNFAYQGSFDYERVDFAISKTSIIYVNPALIYNFYSLGENFFLSAKGGILSGVEFISNSILNKKESQFFVGENIGLCAEYYVTNKIMFNLDLAQRFFQLSKVGKASFIIKLGINYNF*
Ga0071345_1112676	Ga0071345_11126761	F095692	MSLPTFSTQSELFSTTGLSTHLFGRTDRYRLFAKLVYPPLSRARAALEKC