3300005100: Cold seep microbial communities from the Ulleung Basin, East Sea, Korea - Hemire mound

Overview

Basic Information

• IMG/M Taxon OID: 3300005100
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111396 | Gp0114827 | Ga0072724
• Sample Name: Cold seep microbial communities from the Ulleung Basin, East Sea, Korea - Hemire mound
• Sequencing Status: Finished
• Sequencing Center: Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100103530
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cold Seep Microbial Communities From The Ulleung Basin, East Sea, Korea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Cold Seeps → Unclassified → Cold Seep → Cold Seep Microbial Communities From The Ulleung Basin, East Sea, Korea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine cold seep biome → cold seep → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Hemire Mound, Ulleung Basin East Sea, Korea
• Coordinates
  • Lat. (^o): 36.098
  • Long. (^o): 130.0788
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031503	Metagenome / Metatranscriptome	182	Y
F053775	Metagenome	140	Y
F088916	Metagenome / Metatranscriptome	109	Y
F094909	Metagenome	105	Y
F102576	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0072724_105916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6389
Ga0072724_108134	All Organisms → cellular organisms → Bacteria	2742
Ga0072724_115602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5208
Ga0072724_123377	All Organisms → cellular organisms → Bacteria	4154
Ga0072724_140955	Not Available	1319

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0072724_105916	Ga0072724_1059168	F102576	MNDLLMLEKYFPGGSLDGGLELANRLDWGLTVQMAGLEYVVSSGDEPILRTDSKDALQTFIYGLGLAYAVLPEDLFLGLEAALEEL*
Ga0072724_108134	Ga0072724_1081345	F088916	MPSTILDNVKGSDFPKIWADKIDIIPDKTYTVIIQPQEERQSLKKIMSKISRNAKTRGMTPDILEDILGEKVKHIL*
Ga0072724_115602	Ga0072724_1156022	F094909	MLNKRVLDWIEGYVLTRIIIFGDFVGTVKRTNLLVNINTKDDYFRRFEGQRIQALTLPVKSRNLSTLLGEIDGCFQRGWELLDNGEWTESDFDKVYELSRKITAEITDLREENKANLF*
Ga0072724_123377	Ga0072724_1233773	F053775	MKRAIATIVRVTGTCNAGYQVGAKIIVDLDTACINKEQSGNLCIFALSAVLASMGRIRPGEKALASCPDPATGLGGNVIFSVMKEA*
Ga0072724_140955	Ga0072724_1409551	F031503	MDRSELIKLFKAAASVDGSGSIAALKDFAAALTIPILQKIELDSIMRGLFAVETLEAGAQASYPIADDMYDIPVWLLPGLGYVAQNFIEGMGEEVFIPTFDMAASADWKVKYALEGRVDVLQKAIAKVAKTIAEYEDDCGWNVIVPAVTSAWVAQGLLSGRPAPLYEVAPASPGAGYLSKELINKMIVGMERIGRKLTDLYISPEDAADIREWTDTDI