3300005056: Mid-Atlantic Ridge North Pond Expedition - Sample 1383C Shallow

Overview

Basic Information

• IMG/M Taxon OID: 3300005056
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114576 | Gp0113269 | Ga0071102
• Sample Name: Mid-Atlantic Ridge North Pond Expedition - Sample 1383C Shallow
• Sequencing Status: Permanent Draft
• Sequencing Center: The Marine Biological Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 279233715
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine Subseafloor Aquifer → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.8
  • Long. (^o): -46.05
  • Alt. (m): N/A
  • Depth (m): 70 to 146

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F000874	Metagenome / Metatranscriptome	851	Y
F003081	Metagenome / Metatranscriptome	508	Y
F006552	Metagenome	370	Y
F008692	Metagenome / Metatranscriptome	329	Y
F012125	Metagenome	283	Y
F018935	Metagenome / Metatranscriptome	232	Y
F051179	Metagenome / Metatranscriptome	144	Y
F096054	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0071102_1011635	Not Available	3232
Ga0071102_1012396	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	3068
Ga0071102_1057746	Not Available	1037
Ga0071102_1148767	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	566
Ga0071102_1159825	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	541
Ga0071102_1175302	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	510
Ga0071102_1177610	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0071102_1011635	Ga0071102_10116355	F012125	MSDTRYSVMHPDSGKDSFFPAGKPKNLPRFYFLVLAGIFLMIFMFLWFD*
Ga0071102_1012396	Ga0071102_10123965	F003081	MREEMFEETRFGAEVFYMHVRGVDVIFVLTYLHILKKIYLKNYVTADGDG*
Ga0071102_1057746	Ga0071102_10577461	F000874	MKILMILATGAIITFPMDKSIKPDCFSQGYAILEKLATYHGPEEKGKDQGWVLNKSNL
Ga0071102_1079652	Ga0071102_10796521	F096054	MDLNVYEDDDDETLHRKLVAAKIARKRAEEDMKLLTNRIGLLKQEEQKVTCSLV*
Ga0071102_1148767	Ga0071102_11487671	F051179	MEVDFNLKKVFDMPNIEQLIFFYINFDKCRREIIQFEDAKRTSHAGAKHPKDSKKEALNLMRCHSNNLTFEPVCLDSFNDARECLFKLDGQMRLCQNELNLFEECTHDPVRFDKFQKLATPTQAMPKDFFATIIRKDYFN*
Ga0071102_1159825	Ga0071102_11598251	F018935	AKMRLRNTHSYYDYIYKYSARFLNKYQSGAHFHLGRGSGFLELLRLKAARMKGNRNWQWFDVRYGFKFVYVLYIPQMIFAIVCYLLTPVWRRIDERYHLRYGDGEEDDIEDVEPFVTYQPRKKPMTRRKYADAIKLVYDDKEEMDYAPEQPLRYR*
Ga0071102_1168292	Ga0071102_11682921	F000060	RIKEIMAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSHQGSLEEAFELTQDEIKILKKLIKELYVIAEPTRIKGYTDEEMFEANAANEFTVNIGREIQAEMIANGRPSPAKLRNAMSNPYTWNAL
Ga0071102_1175302	Ga0071102_11753022	F008692	SNISKSIRNKMKGNMTKKKRKQTEEEMYMPTSEEEFQADLDAQDMRYLHYCREQEEMYNDPVMNWSGLR*
Ga0071102_1177610	Ga0071102_11776102	F006552	LGKKVLIV*ENAINQYPTVWEATPKVEIPLLISPVLKIKSSRINPVANIPKPIPIAKKAIDILNNVGLPVFLNPTYEIVPITTPTKSPTKFRIISRKNSNYADSATVLNKVSEQVF*