3300004976: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1603 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004976
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092405 | Ga0031671
• Sample Name: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1603 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 149999754
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Pacific Ocean
• Coordinates
  • Lat. (^o): -11.24
  • Long. (^o): -172.63
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014836	Metagenome / Metatranscriptome	259	Y
F022419	Metagenome / Metatranscriptome	214	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031671_1327718	Not Available	734
Ga0031671_1329323	Not Available	690

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031671_1327718	Ga0031671_13277181	F014836	VGAVVVFLLAALSSLALAQCPLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031671_1329323	Ga0031671_13293231	F014836	LLPSAVTMNKLVLLFIVVAFTGLCVAQCPLARDTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTITVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVIAEEFYEVDNDSNIEDMEPFVYACQNPTLTYRDAKIECNLVAPNIMPSSLKVQVLANGYTTDFVLLSEYVQ*
Ga0031671_1333802	Ga0031671_13338021	F022419	MSLRYAALLAPACAFTHSQQPRRIIVRRDYSSIDDVFDSVFDDAFDAWSPFGLSRRRDPWSQFGLSRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDDFLADTPLGQRRQLGTGTPKEDAPTKTDESTSSLYEAPATKDGDAPKAEGDKAVAPAAPRGYAYSW