3300004959: Metatranscriptome of deep ocean microbial communities from Blanes Bay, Balearic Sea - MPBL130115 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004959
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092412 | Ga0031678
• Sample Name: Metatranscriptome of deep ocean microbial communities from Blanes Bay, Balearic Sea - MPBL130115 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25147215
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Blanes Bay
• Coordinates
  • Lat. (^o): 41.67
  • Long. (^o): 2.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009123	Metagenome / Metatranscriptome	322	N
F009426	Metagenome / Metatranscriptome	318	Y
F090441	Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031678_108831	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	677
Ga0031678_109765	Not Available	602
Ga0031678_180790	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	837

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031678_108831	Ga0031678_1088312	F009426	TTAKVNKDLKLWSAMVRGETSYTIIIFMTTGPCVISAGAARETLFEGKADCCMLVCE*
Ga0031678_109765	Ga0031678_1097651	F090441	KGEVWELATLSFLDSLALGALITRRVIIGCQFPDAASYRKNDCDTFRSHSGT*
Ga0031678_180790	Ga0031678_1807901	F009123	SKLTMLSIVGLSATANNAEVTTSNLRSGAAFDNLKASWGKKLSLGDFSSQLDCSYDYNANRDFLKSASLSGNLVDGSGDDLSVGYEVTKNFAGDKTTEVKLTADMSGTRLTAEMDTADQLKEVSAARTVSIGDRDVDLEPSFLVKAQTARVKLMSAFGKDRASAQVDYKTEGGDISYELGYERDLQDGRQVSATLTPADKNLDVELVDTKFESGATWTAKASVPLEADNVLDAAKVTLKRAWNW*