3300004783: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004783
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110155 | Gp0085335 | Ga0007741
• Sample Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 69554210
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000991	Metagenome / Metatranscriptome	811	Y
F011303	Metagenome / Metatranscriptome	292	N
F014988	Metagenome / Metatranscriptome	258	Y
F015606	Metagenome / Metatranscriptome	253	Y
F017318	Metagenome / Metatranscriptome	241	Y
F019991	Metagenome / Metatranscriptome	226	Y
F022657	Metagenome / Metatranscriptome	213	Y
F023855	Metagenome / Metatranscriptome	208	Y
F048103	Metagenome / Metatranscriptome	148	Y
F060013	Metagenome / Metatranscriptome	133	N
F062800	Metagenome / Metatranscriptome	130	N
F064416	Metagenome / Metatranscriptome	128	N
F091401	Metagenome / Metatranscriptome	107	N
F092159	Metagenome / Metatranscriptome	107	N
F100333	Metagenome / Metatranscriptome	102	N
F100415	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0007741_1002167	Not Available	519
Ga0007741_1003291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	503
Ga0007741_1008517	Not Available	601
Ga0007741_1015937	Not Available	752
Ga0007741_1051931	Not Available	528
Ga0007741_1072060	Not Available	651
Ga0007741_1110941	Not Available	539
Ga0007741_1134484	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	625
Ga0007741_1184561	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	823
Ga0007741_1198159	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	560
Ga0007741_1205780	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	932
Ga0007741_1211270	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	568
Ga0007741_1218919	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	535
Ga0007741_1219020	Not Available	527
Ga0007741_1234860	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	888

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007741_1002167	Ga0007741_10021671	F048103	MVKRLGDVGRLIEVGTPIGITRRDIAKNEVIQFHYCVFQYQRVLKTERYVNVRVVPLLTLTNFYQGVSFQVVLKY*
Ga0007741_1003291	Ga0007741_10032911	F064416	PYVCLLTLGSASAFAASAPSSLFASNVEVGYVQQSTDGVSGHLNGWELSATAYLGKSDAFVNAQTSVGGDLGNGADAVSLGYRFKNVASLADVALTVGSNETYGIALHRALGGGFGAWASYEDNAAGHEVSVVLSKSLASNISLDLGYSWISRDALADQNQWSLGVR
Ga0007741_1008517	Ga0007741_10085172	F091401	GLLFVAHTLYFFDGFRNKILFFIGITALRTILIITFLIIVSAEIVAFLAFLGISDKIASDSPNCLSGPCQKFADSVTTQLGQSGITITGETGEVLVSLQQIATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL*
Ga0007741_1015937	Ga0007741_10159371	F023855	VTQYDGNLKTERYGEVRVVSLSSLIKLYQEFSFEGVQKYGSRDVTESSLVSSCSKDNLAGRRATTFQIRNQNQLLIFV*
Ga0007741_1051931	Ga0007741_10519311	F100415	GHTGEPFIAEVRKRNKKGEDTGEMKLIRWKDLQLPVYHRSLKQGWPGIGKEGILHVGYLCLPSKVSDTGEKVWAHYHTDFMNGAEAQIHRVIEAIKQGGKDAYQPSDDGSEYPILAALNGRRMKEYLNIDQLGGIHQ*
Ga0007741_1072060	Ga0007741_10720601	F060013	PESEQRGSKAQLIAAAAVIALGLCAVAFVATQGDAPQEDSVANLYSQYGKQSALKRHTEKLIMGPGQEADDVKAIQAAWITFKYSKDETVLGELTKFDPDAQKTAVQTAIDDMDALGLETKNEGDILKKLALPDP*
Ga0007741_1110941	Ga0007741_11109411	F062800	STVTNRRKGKKGKGNKGKRRTNQLQAISSGAIARPFPATFRVRQTYSNGESFTSSTKVIRGLSEFLARPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVTSAQAISTTPLHTD
Ga0007741_1134484	Ga0007741_11344841	F092159	VWNVETGCDGPAAVAPQTTQLLQLGTGVPQQTTMLNWANLSERAQKIKGLNFCASQFVTEDEVKYCVAKLFSGDVKFATAADY*
Ga0007741_1149625	Ga0007741_11496251	F017318	LPNYAEFTSLFDLYKIERIEIEWTPEYTELTDASLASNAVNVYFNTAIDPAGNTPTVVDDVLQYRSLHSTMITKRHKRDFFPAILMDGIIPASCYISCASPSSNLYGIVYGIPVTGVAMTFRSRAKFHLSMAQSR*
Ga0007741_1184561	Ga0007741_11845611	F022657	MAEITTSQIGNGTTAYGSDIVVKDLDLDVSNRVKDDTPVLNMCMSKKRKVNSTLPLWTD
Ga0007741_1198159	Ga0007741_11981591	F019991	ELIQEKSQFIQANRPKVQQFFDHRSGVVKQQLEQARQNFTDKELANKAVFTELREKLSKDWKGANGSFVPGVPNIDLVSSDEYLLGLVRDGMKFREGPKVKNAGGSLAAASKPMARGKTAPEDKSVELQRKAQSGDKGAARDLLATMLASNRRRR*
Ga0007741_1205780	Ga0007741_12057801	F014988	MFAPTSPVSGAVVPGFTSPTYTLTTDVAPSLNGKQYAVTGLGGTQANVDTNTVSKPFSISFFRPPVLRALPQANPVTGVIKNVPMNTYKLITRKGAQPAASQNAITARITTVIEIPSGCETYEPEDIKALISAHFGVGYAQASGIADTVVSGVM*
Ga0007741_1211270	Ga0007741_12112701	F000991	RLAVSDVSDALGRNVDHYTHKDTHISGYNGADEDEIYDNVFSRFSKEGLTPSGHKTGQKLLMKDDAKLASGQSLEAAHWLSPAEVPSYLDANFENAWNHYDQNGEGWIRYEETHVFMRYLLGKLNRFTGAPGSISDLTSGGKAYKLHYSTTKREKTPVGAV*
Ga0007741_1218919	Ga0007741_12189191	F015606	IKFPLGIIPSIFTLRKIKMADMTTLTTDPFFALTNQVASVREKVSDSIFENYKLQVAQTNDINNRAMQVALHDASELATIKQEIANGTLQTMLAAARTDAAIGATAAANQRLTMEQAEATRRLIVDLNTQNLNTALINTNTALTGLGVSYGGLGLAYGGAVSAYQSANSTNAINALNS
Ga0007741_1219020	Ga0007741_12190201	F100333	KMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYAYKVEYSYTRVTASDSSLASSLYNYTQTTFDMFGQTVHVQGANTKIVRTTQQTYAQLGASNVNQQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILIIALLIVVSAEIIAFLAFLGLSDKIASDS
Ga0007741_1234860	Ga0007741_12348601	F011303	PATMPAMTEAQVSTWVTDFLDALSNPTGGKKGDTGGVDWKKLEDMMNKRCTVELPGEPKCKKFDDFKKKAEEFLASFKGAKRTVPKGTKPIIVQSKKDEVEVIFPEQCLFTWSTGLAEHYPNCTLASGDKAKIFIYNRVLLNGKGECSYYQPVFSNNDFKGADRAEDTDSLLDQIYEDFTPGNARFADDMKVEFPVVGKMEKAGMFDLFAQFKGLKRQMQAGCPPVNMSTGKDEVFEGIVPCVYSFKWSAALNDTFKLELADGADVVLTSYDCLKLKSGKVISFAPHFDPSVNIKP