3300004760: Marine sediment microbial communities from Formosa Ridge, South China Sea G1-3

Overview

Basic Information

• IMG/M Taxon OID: 3300004760
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114441 | Gp0111474 | Ga0068404
• Sample Name: Marine sediment microbial communities from Formosa Ridge, South China Sea G1-3
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7517288
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomics Analysis Of Sediments Collected From Formosa Ridge
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Cold Seeps → Sediment → Marine Sediment → Metagenomics Analysis Of Sediments Collected From Formosa Ridge

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: South China Sea, offshore southwestern Taiwan
• Coordinates
  • Lat. (^o): 22.11546667
  • Long. (^o): 119.28443333
  • Alt. (m): N/A
  • Depth (m): 1146

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040581	Metagenome / Metatranscriptome	161	N
F058159	Metagenome	135	N
F104423	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068404_100962	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	544
Ga0068404_109558	Not Available	648
Ga0068404_110851	All Organisms → cellular organisms → Bacteria → Proteobacteria	652

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068404_100962	Ga0068404_1009621	F104423	VEVHRIRKAKSLYHRERYHILLEVEKDRWLEIESLNGVTYDSIQTFLKSEKETGIRVVGFTDKSFQWGTIKDWNHSGIIKNLKIKK*
Ga0068404_109558	Ga0068404_1095582	F040581	MEFLENFNGIKFMGNGNVYNGYLNQEQTWKEYREWALKNIYE*
Ga0068404_110851	Ga0068404_1108512	F058159	MDLATRDQVIELLQSEIDKTQETVLDYLEEAKNVQNENEFLEGVTNDYKRYHNYILAEKERERKQLETLIGYLDKVLQEAGLSAEMANRARFQQNQILGEMDKIKGELDR