3300004758: Marine sediment microbial communities from Formosa Ridge, offshore Taiwan - G2-3

Overview

Basic Information

• IMG/M Taxon OID: 3300004758
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114441 | Gp0111480 | Ga0068410
• Sample Name: Marine sediment microbial communities from Formosa Ridge, offshore Taiwan - G2-3
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6645689
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	3
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomics Analysis Of Sediments Collected From Formosa Ridge
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Cold Seeps → Sediment → Marine Sediment → Metagenomics Analysis Of Sediments Collected From Formosa Ridge

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: South China Sea, offshore SW Taiwan
• Coordinates
  • Lat. (^o): 22.10811667
  • Long. (^o): 119.29126667
  • Alt. (m): N/A
  • Depth (m): 1162

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021240	Metagenome	219	Y
F028309	Metagenome	192	Y
F040581	Metagenome / Metatranscriptome	161	N
F104423	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068410_101254	All Organisms → cellular organisms → Bacteria	3313
Ga0068410_102555	Not Available	527
Ga0068410_103184	Not Available	1015
Ga0068410_103872	All Organisms → Viruses → Predicted Viral	1000
Ga0068410_109908	Not Available	789

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068410_101254	Ga0068410_1012542	F104423	VEVHRIRKAKSLYHRERYHILLEIEKDRWLEIESLNGVTYDSIQTFLKSEKETGIRVVGFTDKSFQWGTIKDWNHSGIIKNLKTKK*
Ga0068410_102555	Ga0068410_1025551	F028309	PFTHDWRPGDRIVSIAVRESVADTGLGTIQRVLLDKAVVLWDDGEQSEERLKDLIIAGFDESKLVKHADNFGHRGQDEWWTGHSNLEEDISSELALNDRLIINSMLISGIPLTIDKAKGLKWGNFINEGFAQGS*
Ga0068410_103184	Ga0068410_1031841	F021240	MLDFNNSKSRIEIIDQEDRALLRSNPSAWSMPEDGKEHIFYHMLLSSPSSFGSKAKNLLNWCEAPMKAKQAQSSAPVGHMSGLSIR
Ga0068410_103872	Ga0068410_1038723	F040581	MEFLENFNGIKFMGNGNVYNGYLKQEQTWKEYREWALKNIYE*
Ga0068410_109908	Ga0068410_1099081	F021240	MLDFNNSQSKIVNIDREGKALQRCNLSARPMPEDGQGHVLSHMLLPSRSSFGYKAINLLSWCEAPIRVKQAKSSAPVGHMSVLSIR