3300004641: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_200m_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004641
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0111056 | Ga0066623
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_200m_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108229609
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, Vancouver Island, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F029271	Metagenome / Metatranscriptome	189	N
F034189	Metagenome / Metatranscriptome	175	Y
F052275	Metagenome / Metatranscriptome	143	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066623_1001954	Not Available	805
Ga0066623_1077437	Not Available	554
Ga0066623_1225432	All Organisms → cellular organisms → Bacteria	517
Ga0066623_1235510	Not Available	545

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066623_1001954	Ga0066623_10019542	F029271	MSKLSDLQDIKELLDVDFRKDKFLDNQYNNSPCFNYDAAESYVANIHQFLSEKYGEAVIYNFIQEVESLRITTLKMYIESNIAAYRRFTIKTIDDSNKSYYSILTVKKGI*
Ga0066623_1077437	Ga0066623_10774371	F003091	TKPGEGTPRQKYMSQEVFLEERYQISAGLKGPKRLDNETHEDFVLRRNAESGLLKEYLRGVWVIDGNSTALDK*
Ga0066623_1225432	Ga0066623_12254322	F052275	SADVWDAPDRAPIATVDTRHCLGCKSLVEVPIEFHGGGLIGDSDVVPSFLNRCPDCNSSNVQSWDAKHSCPKCGEHMTASVN*
Ga0066623_1235510	Ga0066623_12355101	F034189	MTTNLAKWASNDGQITKSGLPNDRRAKFLPSVVGFAYDLLRYEYYLGNIGLID