3300004627: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_200m_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004627
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0111062 | Ga0066629
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_200m_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 68210478
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004906	Metagenome / Metatranscriptome	419	Y
F016881	Metagenome / Metatranscriptome	244	Y
F018015	Metagenome / Metatranscriptome	237	Y
F029271	Metagenome / Metatranscriptome	189	N
F034189	Metagenome / Metatranscriptome	175	Y
F046847	Metagenome / Metatranscriptome	150	N
F075397	Metagenome / Metatranscriptome	119	N
F078263	Metagenome / Metatranscriptome	116	N
F083344	Metagenome / Metatranscriptome	113	N
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066629_1000399	Not Available	627
Ga0066629_1004994	Not Available	1163
Ga0066629_1013001	Not Available	512
Ga0066629_1013432	Not Available	1033
Ga0066629_1013886	Not Available	586
Ga0066629_1014278	Not Available	514
Ga0066629_1014379	Not Available	1085
Ga0066629_1023203	Not Available	609
Ga0066629_1130655	Not Available	712
Ga0066629_1142381	Not Available	668
Ga0066629_1155929	Not Available	1330
Ga0066629_1165900	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	586
Ga0066629_1166791	Not Available	628
Ga0066629_1172001	Not Available	502
Ga0066629_1177458	All Organisms → Viruses → Predicted Viral	1473
Ga0066629_1177583	Not Available	666

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066629_1000399	Ga0066629_10003991	F029271	MSKLSDLQEIKKLLDVDFRKDKFLDNQYNNSPSFNYDAAKSYVADIHQFLSGKYGEAVIYNFTQEVESLRITTLKMYVESNIVSYQRFGAQK*
Ga0066629_1000399	Ga0066629_10003992	F075397	MKYWHKRVEVVSFFDLDQENQDIELKDDDNAEELAFLIAKDGEYWNLDSFMRTESGRYDGVMGLTNTSAIGVVLSCSGESAVIQCFG*
Ga0066629_1004994	Ga0066629_10049943	F075397	MRHWHKRVEVVSFFDLSEEDQAAEWRDDDNAEELAFLIAENGEYWNLDSFTRAESGRYDGVMSVTDTSAIGVVLSCSGESAVVQCFT*
Ga0066629_1013001	Ga0066629_10130011	F098669	METATRGRKQKWRLKEAEGLGRKWRIEETERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKP
Ga0066629_1013432	Ga0066629_10134322	F083344	MITTIKFTSDDLTMLRGVMSCTAKKSVRRPALNGFHINKDHVVGTDGSRIAKFNTPHLDGELPENGVIIPSIKIPFSIHTVIITIEDDTVTADKYSKQGKTTEVYQTIDANYPLYRKVLADRGKTALDKIAFNPMKISEVAKATKTTITQIEFTSGGELSLIYVNIPE
Ga0066629_1013886	Ga0066629_10138861	F075397	MRHWHKRVAVGSFFDLSEADQAAEWRDDDNAEELAFLIAKDGEYWNLDLFMRTEGRYDGVMGLTNTSAIGVVLSHDCESAVIQYFT*
Ga0066629_1014278	Ga0066629_10142781	F075397	MKYWHKRVEVVSFFDLDQESQAAELKDDDNAEELAFLIAENGDEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFG*
Ga0066629_1014379	Ga0066629_10143794	F029271	MSKLSDLQDIKELLDVDFRKDKFLYNQYNNSPCFNYDAAESYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*
Ga0066629_1023203	Ga0066629_10232031	F083344	LIMLRGVMACAAKNSVRYALNGFHINSEHVVGTDGSRIAKFNTPHFDGELPEKGVIIPTIKIPFSVHTVIITIEDDTITVDKHLKHNKTTEVYQTIDANYPLYRKVLADRGKTALDKIAFNPMLISEVAKATKTTITQLEFTAGGELSLIYVNIPDLPEFIFSIMPARF*
Ga0066629_1130655	Ga0066629_11306551	F004906	MATKTEKKTDARDTLDSNEGNELSAIAVKSLTNLEEKVEAIDWKLWEIYNMMKNYVESNPDGPSVPQISQPQVSTTDIASEIAKALGNSQPEEKQSIVGKLFGK*
Ga0066629_1142381	Ga0066629_11423812	F016881	MAVIADKAWWKSKTIWTSVIAGAVGVLQAAGVVEAVPEVVWTVLASFGLYSVRDAVGKSNPEVK*
Ga0066629_1155929	Ga0066629_11559292	F034189	MTTNLAKWASNDGQITKSGLPNDRRAKFLPSVVGFAYDLLRYEYYLGNIG*
Ga0066629_1165900	Ga0066629_11659001	F078263	MEVFVMELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHDETIKKLEERTRDKFAEMTSQNKATEAMVADKHNDLISKINGISSRVDNLEEKIELAVRELKSEARKTSFLRKLLWLD*
Ga0066629_1166791	Ga0066629_11667911	F046847	MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQ
Ga0066629_1172001	Ga0066629_11720011	F083344	MNKTIIEFTGDELAMLRGVMACTAKNSVRYALNGFHINSEHVVGTDGRRIAKFNTPHFNGELPENGVIIPSIKIPFSVITVVITIEDDKITVDKHLKHNKTTEVYQTIDAKYPLYRKVLADRGKTALDKIAFNPMLISEVAKATKTTITQLEFTSGGELSLI
Ga0066629_1177458	Ga0066629_11774582	F018015	MKDRQIYEMNKKWREFRLDEKLNEENESLWTWVYKGVLGGFKKAEKKGGGSVSLDEVARGVAFLIKTEFGGGAKKRFCKIT*
Ga0066629_1177583	Ga0066629_11775832	F075397	MRHWHKRVAVGSFFDLSEESQDIEWKDDDNAEELAFLIAENGEYWNLDLFMRTDSGRYDGVMGLTNTSAIGVVLSHDCESAVIQYFT*