Sample 3300004624

Basic Information
IMG/M Taxon OID	3300004624 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0055735 \| Gp0103145 \| Ga0058864
Sample Name	Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time B -10min-Anaerobic_ RNA (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time B -10min-Anaerobic_ RNA (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	326448783
Sequencing Scaffolds	22
Novel Protein Genes	22
Associated Families	21

Dataset Contents

Total Genome Size

326448783

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	1
Not Available	9
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Eukaryota	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes

All Organisms → cellular organisms → Eukaryota

Ecosystem Assignment (GOLD)
Name	Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
Type	Engineered
Taxonomy	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Ecosystem Assignment (GOLD)

Name

Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Type

Engineered

Taxonomy

Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.076217	Long. (^o)	-89.411742	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.076217

Long. (^o)

-89.411742

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000736	Metagenome / Metatranscriptome	914	Y
F001598	Metagenome / Metatranscriptome	665	Y
F001602	Metagenome / Metatranscriptome	664	Y
F002706	Metagenome / Metatranscriptome	535	Y
F003108	Metagenome / Metatranscriptome	506	Y
F003657	Metagenome / Metatranscriptome	474	Y
F004323	Metagenome / Metatranscriptome	443	Y
F007793	Metagenome / Metatranscriptome	344	Y
F011159	Metagenome / Metatranscriptome	294	Y
F020311	Metagenome / Metatranscriptome	224	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0058864_1001462	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	714	Open in IMG/M
Ga0058864_1003172	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	606	Open in IMG/M
Ga0058864_1012118	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	761	Open in IMG/M
Ga0058864_1015473	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	775	Open in IMG/M
Ga0058864_1036442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	804	Open in IMG/M
Ga0058864_1046801	Not Available	559	Open in IMG/M
Ga0058864_1155825	Not Available	555	Open in IMG/M
Ga0058864_1182843	Not Available	505	Open in IMG/M
Ga0058864_1285507	Not Available	577	Open in IMG/M
Ga0058864_1350416	Not Available	620	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058864_1001462	Ga0058864_10014621	F001602	GIIFGVVLGLIITFSFQTENKCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVSTPFPFFKETEGNQGCCGCKNNQARLLSDIDARTRTSRTINDFGTHVVTSENSERIDNFARPKQIGDSYFEGNGKAVKDFETR
Ga0058864_1003172	Ga0058864_10031721	F003657	MTYEPLNRRLSILVAVFTFLGVALGVIALATNYWSVRTVIREVNNGTINVQQPVEEWNGLFNTCQTGVPCFTNFFAVTFVLSLLGLVLLLIGGVFSVFDFPRPSNCRFITPLLIFVACVLLTAGLFDYAASALLNYHSSRAFIAALVFAYSALPIAAFVAGRFSALERSVLINNEVHTAQ
Ga0058864_1012118	Ga0058864_10121181	F032545	MKITLSVSVLCLFINLVCQASIADALPTLEADVDMVKTNDDASSLFDNNDHTGSNKQQLRNAKRIKAILENRLKRFRMLDQDEFQAMLTSLSQQAAEEQSKSSDAIDALGGMQLANYWSPV*
Ga0058864_1015473	Ga0058864_10154731	F002706	IILSLSIMALYNIYVLANKSTCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVAQPFPFFKEVESNKQCCGCGKLGPTSDIPQVSVANPADFAGLPQSGMADNGSHLLKIDKSADVKLFDKPVVMGTGQYRNEHIPYTSEFNQRDRRELNLNLLHKD
Ga0058864_1036442	Ga0058864_10364421	F065354	RQHQLTIASHLHTNFFVPKSPSMLTNKTMTIVALVLATVCLLTVKAEEEKKRTLDSVSGSDFFKRNLDTVSGNDFFKREEEKRTLDSVSGSDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKRNDVREQAFRLSHYPNVAREHFHTRLHKQRIGDDNDK*
Ga0058864_1046801	Ga0058864_10468011	F004323	MPLDGLRRLEGRMAPAAIRHSPVARDYPSRALSGVFQTAAPRLFYQGTV
Ga0058864_1155825	Ga0058864_11558251	F037232	WALAQGQSPTLYLQEDAIKKIPGCFPHTSVMTTYGPARIESIRADNVHVAKPINWKLANNSCATLYLQPDGVKLHQTPGFFPGDEVMTVYGRGYVESKREHDLVVKLRDWKLAQGQSPTLYLHPSACVKIPGLLVGDSAKTVWGLVKITDIRRDGTHVCTALHWKLANNTAPTLYLAPEAFALL
Ga0058864_1182843	Ga0058864_11828431	F007793	TNRPSMSEAQDLKDAFEAFAEGKPHLSKVECMMAIHALCKNPIQSDLNGAMSSMGDDISFAQYQQLFAKAWPRPDQQQSDLSKLMQMLDHDDNGKVQEGEFRQLLLSVGDVLSHQEVDLLFEEVPVDDQGFFRYDALVDKLVGGHMPGMH*
Ga0058864_1285507	Ga0058864_12855071	F001598	AVGTKENGIELTGCRDKFLAIKWDPVPDAASYAVFKEVRDIWDMQTVTEACKETLGALRPGNKYLIKILALDASGSRLKTLGTATFVTDGPEDKRQPKIKVEGLEANWEEVLKGYPEPAAKADPYSGATPCPYTWTCTLMNHAGHCQTYGHPRPLVCPNGEGCTLASKEHQAQFSHKA*
Ga0058864_1350416	Ga0058864_13504161	F003108	LVFALLFVVAVYCQTPSKPKWPAAFSATLQIQRGQNPRPDFWRQFYDSVKQVDRFDGLVDFRGDRFFASVYFLHNIGRQYNVFYQLNEVFCFYHPINSTIPKPDFNNWSYGGKALVQYQVADHWFFRDESRGEFLQYFDNADNQNPLRFDFDIRRNQTEITEQWYYHEFDGQTQDANLFEIPVTVKSICNSAQEQDWINIAHN*
Ga0058864_1354611	Ga0058864_13546111	F000736	RNVTNRRSNMSEDRAARRNRGGTAAAGDGVVGIPDALLQELIQAFTYIADPSGAGDVTTVKLTEDRLDRLVRSLGIKTSARDMMRDAGGKELDFIGFRDMMIARIKQSDSEENIRNNFQKFENTKGSGKISARELKTALKKMGRVPLRDSEIEEFLRIPGIESDGFIYYEKFMLEFFGEKSKSAD*
Ga0058864_1374236	Ga0058864_13742361	F011159	MLSDSMMNILLLTIGLLVFIQTIHSIPVQNTNNDDTVAEEDSDDYSLNTHGKRTFSNSDIPDGYVGIMLGKRAATHSFRFPGEAVLLGKRRLPYEAVLLGKRDLPNEAILLGKRRIPHEAVLLGKRDLPNEAILLGKRDLPNEAILLGKRDLPNEGILLGK*
Ga0058864_1379104	Ga0058864_13791041	F020311	LAVILYFFVQWEASTAKICYQCDDKNPSSKFKIIGEKITKCNGVPFDKYATKTSRAFGAAVLTCYTRFNESGHVIKRGAYGLGETYDKNFKCRDRFHTCCRKALCNKHTKAPCPPPENITSKKAVKACFVCKGAENCKPEKLDGSEIRTSGAFGGKNLYCYTKFDPKTGEAVARGGFGFGEAIDKNLKCDSKHYLCCYENLCNKQTIG
Ga0058864_1401963	Ga0058864_14019631	F032160	YQEIVLQSKYEKTQLIMAQNTSENNLEVISMVIWLSTGNGKFFELHGSRETIKQILPQSSESAFRWGYYNSPADPDRQSYTQVLEAFLKAGFRIEGSSGAGSQGLLRTQYILVKRNA*
Ga0058864_1410096	Ga0058864_14100961	F020483	LLLLLEYLLLFLILFRCVYLFRQLNNNNSNMQYHSIIAYLFVMVFAMTIVLTHANKEREQFADLLQKRKHLNGYWVGKRYILTSDEEPSYDSEDDFSAAKRASYLVGKRGTYLVGKRASYLVGRKRRDLMASQ*
Ga0058864_1429865	Ga0058864_14298651	F054015	SYPEGKRLLLCTSTVHATLAVQRKQDLPNEIRPTAGQSERMGWEGHEISAGSVKTFRCVGDVEMNTAGL*
Ga0058864_1430337	Ga0058864_14303371	F025660	FLFSKGPKCAVAVFKGGKEFSGEKIMANKSFVPYLKTIGAVAKGCKVKVHVVDSYKQLKSPTEFVLSTQLPLALGRGIQFDLQDSTGGTLCNKLCMLSHSHKTLPAAKCFLDGVQNKGIKFTAPNTLDDGSVAKLSVTEANNLKVEVQTLCAPKQKAVKAPKVKTI*
Ga0058864_1505874	Ga0058864_15058741	F074446	INIQMTEDTPPVLSAKLSYPTRPYVAQMPFLMRIIGHYTDSGRPMPKSGSPEAEITLRNQLDDEQDQRLVYNDDTQPIEVINPFVRWHRRWYRSKAVDPSPTVGAYYTPFNMALEPWAMGLGDMGCAKIFKQYRMCTHMVPSNRRYLCEDEKDDVKECIFAQKRYLRQQYMYQHRVKKNLPFPEDPLIDGYNWHSFKYLN*
Ga0058864_1524334	Ga0058864_15243341	F042356	VHQHGAHDSGGFNQPFETAQRKTPKGGQQERAHREVHAGAAGRVKNFQALAMLQTTPLICERKAT*
Ga0058864_1534215	Ga0058864_15342151	F051950	STEATYQLNFNVGFSTTRSDVLVHLSQQY*FFAFLCFYYLFSARVVRYRSLKMRPKIVTSFRPHGKGDFLAAIIPAICLNILSNSNFILRLIEQNEASLFTVRVRARQYWVYKFELKNFTDILTAPKNVGYNRTVNTFGDLQVAEDYLYMLQLRSQNNVKSYTEVLKTAGDVKKNHIVAPQEQLSLEITNQAKTNIINNKINSLNLNAL
Ga0058864_1545232	Ga0058864_15452321	F025660	MFKLVALVSIVGVLCLFDISNGFLLSKKPKCPVKVWKGGKEFSGEKISVDKEFIPYLKSIAAVAKACKVRVHVVDSFKQLKSSTEYVLSSQMPLAIGRGIHFNLQDAKGSVVCNKLCMTSRSWKTLPEAACFIDNVQKKGVRFTEPNLLDDGYAAKIGTTQAENLKVSTQKLCAPATTGTKG*
Ga0058864_1551429	Ga0058864_15514291	F089746	NSFISNYSTISIHSNIMVSLMHFAGIASLLVVCFVMYTQQAALSAPSSAEEYSLYKRRIDAHSRASIPLFRGSNLGIFVRKRPFPLVPEHVIFRRKEIRSNTDNDNDLAEYLSNDDKFQRRFDDYSENPGPMFG*

Showing 1 to 22 of 22 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004624: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time B -10min-Anaerobic_ RNA (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences