3300004624: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time B -10min-Anaerobic_ RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004624
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0103145 | Ga0058864
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time B -10min-Anaerobic_ RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 326448783
• Sequencing Scaffolds: 22
• Novel Protein Genes: 22
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	1
Not Available	9
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000736	Metagenome / Metatranscriptome	914	Y
F001598	Metagenome / Metatranscriptome	665	Y
F001602	Metagenome / Metatranscriptome	664	Y
F002706	Metagenome / Metatranscriptome	535	Y
F003108	Metagenome / Metatranscriptome	506	Y
F003657	Metagenome / Metatranscriptome	474	Y
F004323	Metagenome / Metatranscriptome	443	Y
F007793	Metagenome / Metatranscriptome	344	Y
F011159	Metagenome / Metatranscriptome	294	Y
F020311	Metagenome / Metatranscriptome	224	Y
F020483	Metagenome / Metatranscriptome	223	Y
F025660	Metagenome / Metatranscriptome	200	Y
F032160	Metagenome / Metatranscriptome	180	Y
F032545	Metagenome / Metatranscriptome	179	Y
F037232	Metagenome / Metatranscriptome	168	Y
F042356	Metagenome / Metatranscriptome	158	Y
F051950	Metagenome / Metatranscriptome	143	Y
F054015	Metagenome / Metatranscriptome	140	Y
F065354	Metagenome / Metatranscriptome	127	Y
F074446	Metagenome / Metatranscriptome	119	Y
F089746	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0058864_1001462	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	714
Ga0058864_1003172	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	606
Ga0058864_1012118	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	761
Ga0058864_1015473	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	775
Ga0058864_1036442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	804
Ga0058864_1046801	Not Available	559
Ga0058864_1155825	Not Available	555
Ga0058864_1182843	Not Available	505
Ga0058864_1285507	Not Available	577
Ga0058864_1350416	Not Available	620
Ga0058864_1354611	Not Available	591
Ga0058864_1374236	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1891
Ga0058864_1379104	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	625
Ga0058864_1401963	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	558
Ga0058864_1410096	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	770
Ga0058864_1429865	Not Available	523
Ga0058864_1430337	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	526
Ga0058864_1505874	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	710
Ga0058864_1524334	Not Available	818
Ga0058864_1534215	Not Available	667
Ga0058864_1545232	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	609
Ga0058864_1551429	All Organisms → cellular organisms → Eukaryota	555

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058864_1001462	Ga0058864_10014621	F001602	GIIFGVVLGLIITFSFQTENKCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVSTPFPFFKETEGNQGCCGCKNNQARLLSDIDARTRTSRTINDFGTHVVTSENSERIDNFARPKQIGDSYFEGNGKAVKDFETR
Ga0058864_1003172	Ga0058864_10031721	F003657	MTYEPLNRRLSILVAVFTFLGVALGVIALATNYWSVRTVIREVNNGTINVQQPVEEWNGLFNTCQTGVPCFTNFFAVTFVLSLLGLVLLLIGGVFSVFDFPRPSNCRFITPLLIFVACVLLTAGLFDYAASALLNYHSSRAFIAALVFAYSALPIAAFVAGRFSALERSVLINNEVHTAQ
Ga0058864_1012118	Ga0058864_10121181	F032545	MKITLSVSVLCLFINLVCQASIADALPTLEADVDMVKTNDDASSLFDNNDHTGSNKQQLRNAKRIKAILENRLKRFRMLDQDEFQAMLTSLSQQAAEEQSKSSDAIDALGGMQLANYWSPV*
Ga0058864_1015473	Ga0058864_10154731	F002706	IILSLSIMALYNIYVLANKSTCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVAQPFPFFKEVESNKQCCGCGKLGPTSDIPQVSVANPADFAGLPQSGMADNGSHLLKIDKSADVKLFDKPVVMGTGQYRNEHIPYTSEFNQRDRRELNLNLLHKD
Ga0058864_1036442	Ga0058864_10364421	F065354	RQHQLTIASHLHTNFFVPKSPSMLTNKTMTIVALVLATVCLLTVKAEEEKKRTLDSVSGSDFFKRNLDTVSGNDFFKREEEKRTLDSVSGSDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKRNDVREQAFRLSHYPNVAREHFHTRLHKQRIGDDNDK*
Ga0058864_1046801	Ga0058864_10468011	F004323	MPLDGLRRLEGRMAPAAIRHSPVARDYPSRALSGVFQTAAPRLFYQGTV
Ga0058864_1155825	Ga0058864_11558251	F037232	WALAQGQSPTLYLQEDAIKKIPGCFPHTSVMTTYGPARIESIRADNVHVAKPINWKLANNSCATLYLQPDGVKLHQTPGFFPGDEVMTVYGRGYVESKREHDLVVKLRDWKLAQGQSPTLYLHPSACVKIPGLLVGDSAKTVWGLVKITDIRRDGTHVCTALHWKLANNTAPTLYLAPEAFALL
Ga0058864_1182843	Ga0058864_11828431	F007793	TNRPSMSEAQDLKDAFEAFAEGKPHLSKVECMMAIHALCKNPIQSDLNGAMSSMGDDISFAQYQQLFAKAWPRPDQQQSDLSKLMQMLDHDDNGKVQEGEFRQLLLSVGDVLSHQEVDLLFEEVPVDDQGFFRYDALVDKLVGGHMPGMH*
Ga0058864_1285507	Ga0058864_12855071	F001598	AVGTKENGIELTGCRDKFLAIKWDPVPDAASYAVFKEVRDIWDMQTVTEACKETLGALRPGNKYLIKILALDASGSRLKTLGTATFVTDGPEDKRQPKIKVEGLEANWEEVLKGYPEPAAKADPYSGATPCPYTWTCTLMNHAGHCQTYGHPRPLVCPNGEGCTLASKEHQAQFSHKA*
Ga0058864_1350416	Ga0058864_13504161	F003108	LVFALLFVVAVYCQTPSKPKWPAAFSATLQIQRGQNPRPDFWRQFYDSVKQVDRFDGLVDFRGDRFFASVYFLHNIGRQYNVFYQLNEVFCFYHPINSTIPKPDFNNWSYGGKALVQYQVADHWFFRDESRGEFLQYFDNADNQNPLRFDFDIRRNQTEITEQWYYHEFDGQTQDANLFEIPVTVKSICNSAQEQDWINIAHN*
Ga0058864_1354611	Ga0058864_13546111	F000736	RNVTNRRSNMSEDRAARRNRGGTAAAGDGVVGIPDALLQELIQAFTYIADPSGAGDVTTVKLTEDRLDRLVRSLGIKTSARDMMRDAGGKELDFIGFRDMMIARIKQSDSEENIRNNFQKFENTKGSGKISARELKTALKKMGRVPLRDSEIEEFLRIPGIESDGFIYYEKFMLEFFGEKSKSAD*
Ga0058864_1374236	Ga0058864_13742361	F011159	MLSDSMMNILLLTIGLLVFIQTIHSIPVQNTNNDDTVAEEDSDDYSLNTHGKRTFSNSDIPDGYVGIMLGKRAATHSFRFPGEAVLLGKRRLPYEAVLLGKRDLPNEAILLGKRRIPHEAVLLGKRDLPNEAILLGKRDLPNEAILLGKRDLPNEGILLGK*
Ga0058864_1379104	Ga0058864_13791041	F020311	LAVILYFFVQWEASTAKICYQCDDKNPSSKFKIIGEKITKCNGVPFDKYATKTSRAFGAAVLTCYTRFNESGHVIKRGAYGLGETYDKNFKCRDRFHTCCRKALCNKHTKAPCPPPENITSKKAVKACFVCKGAENCKPEKLDGSEIRTSGAFGGKNLYCYTKFDPKTGEAVARGGFGFGEAIDKNLKCDSKHYLCCYENLCNKQTIG
Ga0058864_1401963	Ga0058864_14019631	F032160	YQEIVLQSKYEKTQLIMAQNTSENNLEVISMVIWLSTGNGKFFELHGSRETIKQILPQSSESAFRWGYYNSPADPDRQSYTQVLEAFLKAGFRIEGSSGAGSQGLLRTQYILVKRNA*
Ga0058864_1410096	Ga0058864_14100961	F020483	LLLLLEYLLLFLILFRCVYLFRQLNNNNSNMQYHSIIAYLFVMVFAMTIVLTHANKEREQFADLLQKRKHLNGYWVGKRYILTSDEEPSYDSEDDFSAAKRASYLVGKRGTYLVGKRASYLVGRKRRDLMASQ*
Ga0058864_1429865	Ga0058864_14298651	F054015	SYPEGKRLLLCTSTVHATLAVQRKQDLPNEIRPTAGQSERMGWEGHEISAGSVKTFRCVGDVEMNTAGL*
Ga0058864_1430337	Ga0058864_14303371	F025660	FLFSKGPKCAVAVFKGGKEFSGEKIMANKSFVPYLKTIGAVAKGCKVKVHVVDSYKQLKSPTEFVLSTQLPLALGRGIQFDLQDSTGGTLCNKLCMLSHSHKTLPAAKCFLDGVQNKGIKFTAPNTLDDGSVAKLSVTEANNLKVEVQTLCAPKQKAVKAPKVKTI*
Ga0058864_1505874	Ga0058864_15058741	F074446	INIQMTEDTPPVLSAKLSYPTRPYVAQMPFLMRIIGHYTDSGRPMPKSGSPEAEITLRNQLDDEQDQRLVYNDDTQPIEVINPFVRWHRRWYRSKAVDPSPTVGAYYTPFNMALEPWAMGLGDMGCAKIFKQYRMCTHMVPSNRRYLCEDEKDDVKECIFAQKRYLRQQYMYQHRVKKNLPFPEDPLIDGYNWHSFKYLN*
Ga0058864_1524334	Ga0058864_15243341	F042356	VHQHGAHDSGGFNQPFETAQRKTPKGGQQERAHREVHAGAAGRVKNFQALAMLQTTPLICERKAT*
Ga0058864_1534215	Ga0058864_15342151	F051950	STEATYQLNFNVGFSTTRSDVLVHLSQ*QY***F*FAFL*CFYYLFSARVVRYRSLKMRPKIVTSFRPHGK*GDFLAAIIPAI*CLNILSNSNFILRLIE*QNEASLFTVRVRARQ*YWVYKFELKNFTDILTAPKNVGYNR*TVNTFGDLQVAEDYLYMLQLRSQNN*VKSY*TEVLKTAGDVKKNHIVAPQEQLSLEITNQAKTNIINNKINSLNLNAL
Ga0058864_1545232	Ga0058864_15452321	F025660	MFKLVALVSIVGVLCLFDISNGFLLSKKPKCPVKVWKGGKEFSGEKISVDKEFIPYLKSIAAVAKACKVRVHVVDSFKQLKSSTEYVLSSQMPLAIGRGIHFNLQDAKGSVVCNKLCMTSRSWKTLPEAACFIDNVQKKGVRFTEPNLLDDGYAAKIGTTQAENLKVSTQKLCAPATTGTKG*
Ga0058864_1551429	Ga0058864_15514291	F089746	NSFI*SNYSTISIHSNIMVSLMHFAGIASLLVVCFVMYTQQAALSAPSSAEEYSLYKRRIDAHSRASIPLFRGSNLGIFVRKRPFPLVPEHVIFRRKEIRSNTDNDNDLAEYLSNDDKFQRRFDDYSENPGPMFG**