3300004622: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time C-32min-Anaerobic_ RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004622
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0103146 | Ga0058865
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time C-32min-Anaerobic_ RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 305718442
• Sequencing Scaffolds: 23
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F001598	Metagenome / Metatranscriptome	665	Y
F001602	Metagenome / Metatranscriptome	664	Y
F004323	Metagenome / Metatranscriptome	443	Y
F006177	Metagenome / Metatranscriptome	379	Y
F008678	Metagenome / Metatranscriptome	329	Y
F011159	Metagenome / Metatranscriptome	294	Y
F018307	Metagenome / Metatranscriptome	235	Y
F018543	Metagenome / Metatranscriptome	234	Y
F022887	Metagenome / Metatranscriptome	212	Y
F023638	Metagenome / Metatranscriptome	209	Y
F032160	Metagenome / Metatranscriptome	180	Y
F033437	Metagenome / Metatranscriptome	177	Y
F049099	Metagenome / Metatranscriptome	147	Y
F051950	Metagenome / Metatranscriptome	143	Y
F051952	Metatranscriptome	143	N
F054605	Metagenome / Metatranscriptome	139	Y
F055834	Metagenome / Metatranscriptome	138	Y
F063845	Metagenome / Metatranscriptome	129	Y
F065354	Metagenome / Metatranscriptome	127	Y
F077495	Metagenome / Metatranscriptome	117	Y
F083600	Metagenome / Metatranscriptome	112	N
F084936	Metagenome / Metatranscriptome	111	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0058865_1001234	Not Available	629
Ga0058865_1016481	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	729
Ga0058865_1052128	Not Available	629
Ga0058865_1052188	Not Available	547
Ga0058865_1070371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	575
Ga0058865_1089282	Not Available	570
Ga0058865_1115217	Not Available	630
Ga0058865_1133533	Not Available	599
Ga0058865_1152593	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	548
Ga0058865_1190062	Not Available	596
Ga0058865_1235128	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	663
Ga0058865_1237559	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	605
Ga0058865_1254281	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens	631
Ga0058865_1279510	Not Available	503
Ga0058865_1340287	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	600
Ga0058865_1341839	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	770
Ga0058865_1353707	Not Available	556
Ga0058865_1357137	Not Available	544
Ga0058865_1359944	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	506
Ga0058865_1492736	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	725
Ga0058865_1499861	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	693
Ga0058865_1517373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	656
Ga0058865_1518773	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	831

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058865_1001234	Ga0058865_10012341	F077495	AKHTYTNSLNKNMYSNRNIILLIGLTLAILLLSCTVKADTVDDEQHLVANTDEDNSISNEVDDELEFYRRASLRPVALYQRASLRPFAGKRASLRPFAGKRASLRPFAGKRASLRPVNYMGKRKRRSLMYVDSE*
Ga0058865_1016481	Ga0058865_10164811	F006177	MPRVRVPVRRSGVRYTTRPGRRYPVRPAPVQPAGGRGLLGGLAGLLLCLFCLATLGLLGLFATFIAVTAYLGDIYRALKDANSGAGLYMNMIVLLAALCFAGFHKLQRAL*
Ga0058865_1052128	Ga0058865_10521281	F051952	MPKNPRQTIAPDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGLEVFTFRSIFTSLEDVVSANPQDRLLRMKEVFGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFPPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTS
Ga0058865_1052188	Ga0058865_10521881	F004323	MPLDGLRRLEGRMAPAAIRHSPVARDYPSRALSGVFQTAAPRLFY
Ga0058865_1070371	Ga0058865_10703711	F033437	FRGQFVGVGVRHALFPVGTRLDALAFAGGVLPDATLRGMRMYRSHGGTVLTVTGRDLSSEASAPGSDAPCRERLAGRGADTPATCTIRVGTFTTGTAPACDRPLAPRYGSDLLPLRLLFAFAAG*
Ga0058865_1089282	Ga0058865_10892821	F000344	MRPRSAHAALSGVGEHTARESESAQCCAAGKERVANAHPH
Ga0058865_1115217	Ga0058865_11152171	F051950	STEATYQLNFNVGFSTTRSDVLVHLSQ*QY***F*FAFL*CFYYLFSARVVRYRSLKMRPKIVTSFRPHGK*GDFLAAIIPAI*CLNILSNSNFILRLIE*QNEASLFTVRVRARQ*YWVYKFELKNFTDILTAPKNVGYNR*TVNTFGDLQVAEDYLYMLQLRSQNN*VKSY*TEVLKTAGDVKKNHIVAPQEQLSLEITNQAKTNII
Ga0058865_1133533	Ga0058865_11335331	F001598	SAGTAVGTKENGIELTGCRDKFLAIKWDPVPDAASYAVFKEVRDIWDMQTVTEACKETLGALRPGNKYLIKILALDASGSRLKTLGTATFVTDGPEDKRQPKIKVEGLEANWEEVLKGYPEPAAKADPYSGATPCPYTWTCTLMNHAGHCQTYGHPRPLVCPNGEGCTLASKEHQAQFSHKA*
Ga0058865_1152593	Ga0058865_11525931	F032160	EIVLQSKYEKTQLIMAQNTSENNLEVISMVIWLSTGNGKFFELHGSRETIKQILPQSSESAFRWGYYNSPADPDRQSYTQVLEAFLKAGFRIEGSSGAGSQGLLRTQYILVKRNA*
Ga0058865_1190062	Ga0058865_11900621	F084936	SPHKMLVLLFLVALAIAAPVKPNFSEDFTAEAIYTIRRGRDHPRSFHGQWFHDGTAKRERFDVEADMVGRVDLYKFWNNTKGGLEYEDIKSHQTCHHRPFVQPYHGIFDFVAGSHYAATCDGGKGARWTATIPGAFELDLCASVDGTTPYWVERKHLVEHRLEVTVRFHEFKAGRPANSLFVIPNECKKN*
Ga0058865_1235128	Ga0058865_12351281	F063845	ITIENMFVTLIFLALVGVSLTAPSYPLWPTGFRTEATVTAFDEDNVPHIHRSTFYYTYTNKTSTGRLHGEERHDHYDYCYGWAVGQPSCTILITENVYVIAKNLCCIAMPGNAGVPINWLKGATWLGVEQIHGKNVDHWYSFEHEYWSEVNEPRNGIRYSGPNFKTPRQFTDYDEWKIEPQDPELFLLPKDTDCSKACPQ*
Ga0058865_1237559	Ga0058865_12375591	F008678	TVSIYFQIYSQTNSIQIIMTALRVFPFIGAAVAIGALVLGIIGVSTTYWFSNAAGHEGLWQKCPLGICVRTDGGRTAAIALAAVIAIGVGALLAVFSGLARQKSDAGNNLARLAGIVSVILLFSSGVLIAAALYTFIGIKNATGYSFTVMGIAQFLSFLAAMLVAHWMGHSFTVIN*
Ga0058865_1254281	Ga0058865_12542811	F011159	KRFKLHFNLYKFFSLMLSDSMMNILLLTIGLLVFIQTIHSIPVQNTNNDDTVAEEDSDDYSLNTHGKRTFSNSDIPDGYVGIMLGKRAATHSFRFPGEAVLLGKRRLPYEAVLLGKRDLPNEAILLGKRRIPHEAVLLGKRDLPNEAILLGKRDLPNEAILLGKRDLPNEGILLGK*
Ga0058865_1279510	Ga0058865_12795101	F018543	MMWANQSAAANRRPAGQSDGSDNLAATVAADRAFPAAVAELGR*
Ga0058865_1340287	Ga0058865_13402871	F023638	MICKSLLFLPIFVNLLLVHGKTILNEKCDENTVNLHMLRCYQEHIDSNIDATSAENAYYMEGSLLCQAYNESASYRHCLFSIFDVNDICSFDRYPFSYEYSKIYWKLVMSSCSVDKNENCRPSHLSHQTLSKCHYSFDDKYPTRCKEFLNSVRCMGNHENEIIPRHYGSFCSRNKAYYYYFGD
Ga0058865_1341839	Ga0058865_13418391	F022887	SSTNQSSTMPRDNIPKTALKKLERFFTKTLDTNNDGLVNWTDFEAAIESIVSQDDANKNARLKILRKRLEQHFQKYFWDLCAIGDANNDGNIDLDEWLDVMNDIIGGLKDKNEFPEWYEGLHKALYRANEFLDERAVSKSEFANMLLSWDIDESAAEKAYDFITEHGQKKMDYNLFSEFMKKFFLNETPKHPLNLGLD*
Ga0058865_1353707	Ga0058865_13537071	F055834	MRTERMPWTCRWSEFRPSATTTPMWMDQWMSQWGCLIERKTDTAGNLDRCADCERWETRDERAGQPAPDREI*
Ga0058865_1357137	Ga0058865_13571371	F018307	QEFLRSKPIQPSSSLNRIMQTKLIFLAGLLAVLFLFHFNTVQSTILINSEEQWDDISSEDSSEFDKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGK*
Ga0058865_1359944	Ga0058865_13599441	F083600	EIKRITMSSQRALAAIQTMKIIYGSQGRQNVLPYHYLGQVYRTPWRFWYSNSQVFRWFSRIMLSAFALTLYLPLKGVDLSYTPYTIVHHQLDHKFGDWIEEMRYPVDQKRVEEYKKAHGLK*
Ga0058865_1492736	Ga0058865_14927361	F001602	FNTGIIFGVVLGLIITFSFQTENKCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVSTPFPFFKETEGNQGCCGCKNNQARLLSDIDARTRTSRTINDFGTHVVTSENSERIDNFARPKQIGDSYFEGNGKAVKDFETR
Ga0058865_1499861	Ga0058865_14998611	F049099	MNDIIGGLKEKNEFPEWYEGLHKALFRANEFLDERAVSKEEFANMLISWDIEEAHAEKAYDFITDHGKKHMDYNLFSEFMKKFFLNETPKHPLNLGLD*
Ga0058865_1517373	Ga0058865_15173731	F065354	KKRTLDSVSGSDFFKRNLDTVSGNDFFKREEEKRTLDSVSGSDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKRNDVREQAFRLSHYPNVAREHFHTRLHKQRIGDDNDK*
Ga0058865_1518773	Ga0058865_15187731	F054605	HTLFIFSLLLIIHKTIYLIMMMKSFSTLFVIVVASFILLTKTNGISGQAASSDDSVRSNWLSDAHRNRVELFKKWLGNKPIPHSIHDKSQQSPYNILHPEQKFKGCTDPSEPFQCPESEKCIALQFICDGHPGDCPRNTDENEETCIAAKRPAKDNIEKFLQAEYTLHGPKLFTFLFGHKISKSIEQNNLFWFDTLASAFSVAKTIRNFAEKTHMSPEDLAHFQNVVQTIHDGQLEEIPMYAQEAVNQGLASLIEKLYESGFMDQ*