3300004621: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time D- 0min-Aerobic_ RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004621
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0103147 | Ga0058866
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time D- 0min-Aerobic_ RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 272145878
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. ATCC 39116	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000736	Metagenome / Metatranscriptome	914	Y
F001598	Metagenome / Metatranscriptome	665	Y
F002706	Metagenome / Metatranscriptome	535	Y
F008175	Metagenome / Metatranscriptome	337	Y
F008678	Metagenome / Metatranscriptome	329	Y
F010229	Metagenome / Metatranscriptome	306	Y
F011950	Metagenome / Metatranscriptome	285	Y
F017164	Metagenome / Metatranscriptome	242	Y
F020483	Metagenome / Metatranscriptome	223	Y
F023638	Metagenome / Metatranscriptome	209	Y
F029956	Metagenome / Metatranscriptome	186	Y
F032160	Metagenome / Metatranscriptome	180	Y
F033437	Metagenome / Metatranscriptome	177	Y
F039434	Metagenome / Metatranscriptome	163	Y
F045501	Metagenome / Metatranscriptome	152	Y
F054605	Metagenome / Metatranscriptome	139	Y
F065354	Metagenome / Metatranscriptome	127	Y
F069054	Metagenome / Metatranscriptome	124	Y
F083600	Metagenome / Metatranscriptome	112	N
F084936	Metagenome / Metatranscriptome	111	N
F089747	Metagenome / Metatranscriptome	108	Y
F102369	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0058866_1000328	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	557
Ga0058866_1004022	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	720
Ga0058866_1067635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	558
Ga0058866_1103892	Not Available	575
Ga0058866_1108844	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	759
Ga0058866_1110609	Not Available	523
Ga0058866_1161953	Not Available	616
Ga0058866_1184549	Not Available	513
Ga0058866_1288333	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	792
Ga0058866_1290314	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	981
Ga0058866_1293840	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	509
Ga0058866_1294715	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	786
Ga0058866_1315490	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	887
Ga0058866_1321094	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	501
Ga0058866_1416863	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	708
Ga0058866_1423168	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	544
Ga0058866_1432078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. ATCC 39116	1012
Ga0058866_1450657	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	886
Ga0058866_1454421	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	573
Ga0058866_1457405	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	527
Ga0058866_1459333	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1206
Ga0058866_1459617	Not Available	675
Ga0058866_1469076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	831
Ga0058866_1474108	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	766

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058866_1000328	Ga0058866_10003282	F008175	MVNPLAAALGPVGGLAACACCLLIAAIWGLFATTIALAVYTKDWRDTLRLGSGVDSGAVQMLFSQALLIGILCVYGYMGLRRAIRSAN*
Ga0058866_1004022	Ga0058866_10040221	F069054	NKFRQSFLCNENKTYPMLLSKYSSTRQIYSKLFERAILVRSAHHQTTSDSNQKQYRTPLSLDPDFRAPPDDELPRAKTPEMKGIHFNIRDFYQHYFPNDPVEARLPTPWHMDIYYRKQYYIIGALLGVFFGIYVSYRRILVDRARRRDWEKHHGDPLSYYDVIGPIDPNATRKVWDDNPNLPQPQGWVSKVQTEHQSH*
Ga0058866_1067635	Ga0058866_10676351	F033437	GVGVRHALFPVGTRLDALAFAGGVLPDATLRGMRMYRSHGGTVLTVTGRDLSSEASAPGSDAPCRERLAGRGADTPATCTIRVGTFTTGTAPACDRPLAPRYGSDLLPLRLLFAFAAG*
Ga0058866_1103892	Ga0058866_11038921	F000736	TNRRSNMSEDRAARRNRGGTAAAGDGVVGIPDALLQELIQAFTYIADPSGAGDVTTVKLTEDRLDRLVRSLGIKTSARDMMRDAGGKELDFIGFRDMMIARIKQSDSEENIRNNFQKFENTKGSGKISARELKTALKKMGRVPLRDSEIEEFLRIPGIESDGFIYYEKFMLEFFGEKSKSAD*
Ga0058866_1108844	Ga0058866_11088441	F023638	MICKSLLFLPIFVNLLLVHGKTILNEKCDENTVNLHMLRCYQEHIDSNIDATSAENAYYMEGSLLCQAYNESASYRHCLFSIFDVNDICSFDRYPFSYEYSKIYWKLVMSSCSVDKNENCRPSHLSHQTLSKCHYSFDDKYPTRCKEFLNSVRCMGNHENEIIPRHYGSFCSRNKAYYYYFGDLAARLQLAVNVCEQDSFDN*
Ga0058866_1110609	Ga0058866_11106091	F001598	TGCRDKFLAIKWDPVPDAASYAVFKEVRDIWDMQTVTEACKETLGALRPGNKYLIKILALDASGSRLKTLGTATFVTDGPEDKRQPKIKVEGLEANWEEVLKGYPEPAAKADPYSGATPCPYTWTCTLMNHAGHCQTYGHPRPLVCPNGEGCTLASKEHQAQFSHKA*
Ga0058866_1161953	Ga0058866_11619531	F102369	MKLVHDNFLFLFAFIIIGSQLLSICTANTDATSLDLNKRYRYDKKDISTLSNSMESNDLDTDDGHVLALNKRYRFDKRYRYDKRSNNNGINKRYRFDKRYRFD*
Ga0058866_1184549	Ga0058866_11845491	F089747	KMKVLFLILISIALALSLQVQFPIVLLYNGACDPWARGAACHGTATSEHIATHINANAGAKTSVTNVIGARSRNFGNATYTGSNSYTVYGNVTYGVFDEHAIYFSSLNGFCIPNCTDSHAIFIDTGVINGGLGAYKNATGTYSAIQQPFHGKPGVEFWFNALITLDK*
Ga0058866_1288333	Ga0058866_12883332	F039434	ALEHIEKSKTAFLATLSEAEKGPSSNSMPPKDHFILKFDRNTIKNLKGRVYETMKQYSYEQRGESIPVFVNNREGGDEPTTLNPIKPETPTVGQQYVACIYDDLKIIDALILIEWNQVDELVKTANARRKSVV*
Ga0058866_1290314	Ga0058866_12903142	F032160	MEQTSSNSSNNNLDVVSMIIWLSTGNGKFFELHGSRDIIKQVLPKSSETAFRWGYYNSPADPDRQSYTQVLEDFLKAGFRIEGSSGAGTQGLLRAQYILVKRS*
Ga0058866_1293840	Ga0058866_12938401	F083600	YQEIKRITMSSQRALAAIQTMKIIYGSQGRQNVLPYHYLGQVYRTPWRFWYSNSQVFRWFSRIMLSAFALTLYLPLKGVDLSYTPYTIVHHQLDHKFGDWIEEMRYPVDQKRVEEYKKAHGLK*
Ga0058866_1294715	Ga0058866_12947152	F029956	MLKQLVIILSLIQIISCLSARSNIWWSRRNEKSEINCDVDFQNENPSHEGKICGYCFAKCQQQFAACLLAEINNVIDESIDYCTKLSRTCETHCLSDKRTSRIAERNWSKVVSFLRSFNTLSQNTIEKNEE*
Ga0058866_1315490	Ga0058866_13154901	F054605	KQHYIIFIYFEIIIMMKSIPSFLTILISSQLVIIHISTSTELDRSTINSFRSHWLSDSHGNRNEALKRWLEQKRMGGHSLYSSSSSPFDILHAHKFKGCIDPSEPFQCPQSQQCIALQFICDGHPGDCPGNTDENEETCIAAKRPAKENIEKFLQAEYALHGSKLFAFIFGSKLAKAIEENNAFWFDSLASAFSVSKNLIGFGEKLRLTPDDIAHFRKVIEIVHNGQLEEIPKFAQEAVNQGLASLIEKLYESGFMD*
Ga0058866_1321094	Ga0058866_13210942	F045501	EFPSNSNDLPSSSTTTNTVSQQQQPTTAPPVFKTEMLDWLQSDFDEFDLGPPPTQLASDRVTRSMKKLNVQEKTKQEDDEQDWVHVE*
Ga0058866_1416863	Ga0058866_14168631	F010229	HQVKSVVFLSVKIMLPILRSRVSLTRVITQTLAAQRQRDAFRVPTQNSSAVAPLTDEQRAFNLKIWPGVPETVRPTPIDYCPIDPVEYDKQTNRFSSQVSMWKWLSLLVAIPAVALLTYINLILPQNHTRPEFKDWDHLRPRMKWPIKDGQHSPFHSKWFNAIHFDAKGYETTDAEFEKQFHHGHGSKH*
Ga0058866_1423168	Ga0058866_14231681	F032160	IVLQSKYEKTQLIMAQNTSENNLEVISMVIWLSTGNGKFFELHGSRETIKQILPQSSESAFRWGYYNSPADPDRQSYTQVLEAFLKAGFRIEGSSGAGSQGLLRTQYILVKRNA*
Ga0058866_1432078	Ga0058866_14320781	F011950	FSFSFFLFFVCSIQMGLFGNKREKSEKVDKYEYHASSKGGRPGGYGPPALLGGGYFGGNPSYFDGFSQVAPSSQTGKSSKYANGNKSLYGGVDPMQQAMLLPPSSPAALQAQAAAMFSMQQYMQQQGQGAQFGGILPPIQMPLNVAQQTGILPAQSQPFYGAYPGQQPSTATPFVDPNNVQFGQMVGQPAQQPGAFAPYQQPNFYDPASASAYPAPYGYMPSAF*
Ga0058866_1450657	Ga0058866_14506571	F008678	LIFYILVKKNNVVESFFINRYSTTVSIYFQIYSQTNSIQIIMTALRVFPFIGAAVAIGALVLGIIGVSTTYWFSNAAGHEGLWQKCPLGICVRTDGGRTAAIALAAVIAIGVGALLAVFSGLARQKSDAGNNLARLAGIVSVILLFSSGVLIAAALYTFIGIKNATGYSFTVMGIAQFLSFLAAMLVAHWMGHSFTVIN*
Ga0058866_1454421	Ga0058866_14544211	F020483	MQYQTILAYILVALFGLTFVTAQANKDREQFADLLQKRKHLHGYWVGKRFAAVASDEDFNDSDEDLSAAKRASYLVGKRGTYLVGKRASYLVGRKRRDMMATDNNQQ*
Ga0058866_1457405	Ga0058866_14574051	F020483	MQYHSIIAYLFVMVFAMTIVLTHANKEREQFADLLQKRKHLNGYWVGKRYILTSDEEPSYDSEDDFSAAKRASYLVGKRGTYLVGKRASYLVGRKRRDLMASQ*
Ga0058866_1459333	Ga0058866_14593331	F017164	DFYSLPIFSFFLYLIYVFFVYHLIVYIQSMAANGNVQFNSMPKHMSDSWIVIDDHDESDFVVIENEHAKQLTPVPLIPSPKVSPQTKRPLAQSNNKPTNISQPPTSTSGGKHKKRKWKVLYSLPSTSIKTNVDDSNLDSFVMDQHAQLYDKRDLFSNQQHIVKVK*
Ga0058866_1459617	Ga0058866_14596171	F084936	PHKMLVLLFLVALAIAAPVKPNFSEDFTAEAIYTIRRGRDHPRSFHGQWFHDGTAKRERFDVEADMVGRVDLYKFWNNTKGGLEYEDIKSHQTCHHRPFVQPYHGIFDFVAGSHYAATCDGGKGARWTATIPGAFELDLCASVDGTTPYWVERKHLVEHRLEVTVRFHEFKAGRSVPSPYCEILTYSLF*
Ga0058866_1469076	Ga0058866_14690761	F065354	MSTNKTMTIVALVLATVCLLTVKAEEEKKRTLDSVSGSDFFKRNLDTVSGNDFFKREEEKRTLDSVSGSDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKRNDVREQAFRLSHYPNVAREHFHTRLHKQRIGDDNDK*
Ga0058866_1474108	Ga0058866_14741081	F002706	GIIFGVVLGLIITFSFQTENKCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVAQPFPFFKEVESNKQCCGCGKLGPTSDIPQVSVANPADFAGLPQSGMADNGSHLLKIDKSADVKLFDKPVVMGTGQYRNEHIPYTSEFNQRDRRELNLNL