3300004578: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 44_HOW7 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004578
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111182 | Ga0066518
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 44_HOW7 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32382089
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001633	Metagenome / Metatranscriptome	660	Y
F019939	Metagenome / Metatranscriptome	226	Y
F037232	Metagenome / Metatranscriptome	168	Y
F063223	Metagenome / Metatranscriptome	129	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066518_129151	Not Available	700
Ga0066518_130422	Not Available	559
Ga0066518_137182	Not Available	663
Ga0066518_153447	Not Available	783

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066518_129151	Ga0066518_1291511	F063223	AANWKPHTAAELQAEAAKLLSKAKMIQDARAAREEEKKKLAAENASLGMFSSSQDDNYEDEITQLKRVSARMNRLHEQIEAPHPGDSFEGSIARKKYFLKIYAELKNEVTQIVESYALRTGNSIFSMFGDGKIDPSIAAFLPPNSVAGILAKYTNPTLERDDETPRDVISGKDAKRIQYSIDYYNAKAGGTKLPMPPKFAPTDEEIAAERKHNDIRLNKVVATQEGEFGQNRP
Ga0066518_130422	Ga0066518_1304221	F019939	VMFDNGSDKARRFRHTDVLASRAARARFTQVRHGTGAEADAQRAAYLKLYSTLYASFEGLCATRMPLAYLPYCNDMLKSYRYFAQGINFNDRPDQICMNGNFCDHRAYVRAVTHTAYTREPGDA*
Ga0066518_137182	Ga0066518_1371821	F037232	HHSSTMTNFGIFDSVNTTYGPGYISAIRDDCYVVLLINWALAQGQSPTLYLQKESITAIPGAFPGTTVKTTYGPARIEKIRSDGVHIARPINWKLANDTTATLYLQPETVQLQQTPGFEEGDEVMTVYGQGYVKSKRTKSGDLVVLLRNWALAQGQSPTCYLNPTACVKIPGLKVGAIAKTVWGLVKVLSIRRDGTHVCEAVHWKLANNKPPTLYLAPEAF
Ga0066518_153447	Ga0066518_1534472	F001633	LFPVRTRLDALAFAGGVLPDATLRGMRMYRSHGGTVLTVAGRDLSSEASAPGSVALPEAARRTWCGHVCNTKFSRRHRCHGDGASWWLAVGPALRV*