3300004577: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 20_HOW5 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004577
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111166 | Ga0066502
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 20_HOW5 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29516537
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004323	Metagenome / Metatranscriptome	443	Y
F014854	Metagenome / Metatranscriptome	259	Y
F027707	Metagenome / Metatranscriptome	193	Y
F037232	Metagenome / Metatranscriptome	168	Y
F063716	Metagenome / Metatranscriptome	129	Y
F082737	Metagenome / Metatranscriptome	113	Y
F098384	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066502_132202	Not Available	517
Ga0066502_140577	Not Available	707
Ga0066502_144037	Not Available	521
Ga0066502_151971	Not Available	564
Ga0066502_159362	Not Available	632
Ga0066502_160530	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	664

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066502_132202	Ga0066502_1322022	F027707	SKANMVGYDLVTNKKYQETVPGHATMFGFEPKKMEYEVVDIADGQINAITPEGVEKFFNLPEEEHGPKLLADFQANAAAGGEQFYIITVLYCPRMVGKKWMANLYVESYKPGKTD*
Ga0066502_140577	Ga0066502_1405771	F037232	FHSTMSAFKIFDTVNTIYGNGFISAVRPDCYVVQLTNWALAQGQSPTLYLQEDAIQKIPGAFPHTTVLTTYGPARIESIRADNVHIAKPINWKLANNSCATLYLQPDGVKLHQTPGFIPGDEVMTVYGRGYIESHREKDVVVKLRNWKLAQGQSPTLYLHPSACVKIPGLNVGDSAKTVWGMVKITDIRRDGTHVCTALHWKLANNCAPTLYLAPEAFALLSIKP*
Ga0066502_144037	Ga0066502_1440371	F098384	ATAAAQKALKVRNTNSQLQKKPGGRGIVRVVAEDLVQALCAVDKMPLLFNPYCGGFSEANAINAVRKGIFFNIPTIEVCGQAALCRDDAYLNTNAAVHATKTSLFLNSQRGICGMLGGSRDRPNSRDGQLLNAVCTAHGAVFGQ*
Ga0066502_151971	Ga0066502_1519711	F082737	SLQLAPQPACQV*ACHIQHAGRCPRLAPRPRCFSVGASMLGGPPASLPVRSQNLETDFHSPTKTNLLPDRRGGVRVPALPLQLCGTLAVSPVRSDLHPRPVSRTAWDFYDQNPLLPDPAPLLPASLNRRSPLGFFAPPDQSARSRWPTGNLLSATPDLPSLPTGGRIRYQHQRIIVPAPLRLCQLAV
Ga0066502_159362	Ga0066502_1593621	F063716	VKRRDPWHGANALSKTAADPVLMVETRKKIIGVSQPGSQAGGATTS*
Ga0066502_159362	Ga0066502_1593622	F014854	VSRMIPGNWGKVESGWLARPLLDRIARFGGGGRIHQFLWSRSHAVSYAKRNLAARGDKKPLRVGSSSSGRFRAWANRSYPEGKWLLLCIGTGRVTLADSINRLKPPNESH*KVDKGSTRTGKITQARQAA*KTSKRRRC*
Ga0066502_160530	Ga0066502_1605302	F004323	MPLTGFRLWEGMAAPAATNLSPVTRDYPSRALSDVFQAAALR