3300004570: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 7_HOW4 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004570
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111157 | Ga0066493
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 7_HOW4 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21337526
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	2
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001633	Metagenome / Metatranscriptome	660	Y
F011719	Metagenome / Metatranscriptome	288	Y
F041780	Metagenome / Metatranscriptome	159	Y
F046210	Metagenome / Metatranscriptome	151	N
F082737	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066493_100800	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	747
Ga0066493_103579	Not Available	558
Ga0066493_103778	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	645
Ga0066493_111798	Not Available	593
Ga0066493_153599	Not Available	536
Ga0066493_154596	Not Available	743

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066493_100800	Ga0066493_1008002	F001633	ALAFAGGVLPDATLRGMRMFRSHGGTVLTVAGRDFSSEASSPGSDAPCRERRAGRGADTPAIFIVSRRHLYHGDGTSFWPVVGPALRV*
Ga0066493_103579	Ga0066493_1035791	F082737	MLGGPPASLPVRSQNFETDFHSPSKTNLLPDRRGGVRVPALPLQLCGTLAVSPVRSDLHPRPVSRTAWDFYDQNPLLPDPAPLLPASLNRRSPLGFFAPPDQSARSRWPTGNLLSATPDLPSLPTGGRIRYQHQRIIVPAPLRLCQLAV
Ga0066493_103778	Ga0066493_1037781	F001633	ALAFAGGVLPDATLRGMRMFRSHGGTVLTVTGRDLLSEASSPGSDAPCRERRAGRGADTPAIFIVSRLHPYHGDGTSFWPAVGPALRV*
Ga0066493_111798	Ga0066493_1117981	F046210	NIQMKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAEAAVKCRNVNS*
Ga0066493_113814	Ga0066493_1138142	F001633	FATRSFPVAHEGALAFAGCVLPDATLRGRRMFRSHGGTVLTVAGRDLLSEASSPSSVAPAGSGTPDVVRTRLQSYFASARYHGDGASLWLAVGPALRV*
Ga0066493_153599	Ga0066493_1535991	F041780	ACSPTGMHGQNTAF*MTGLNSLCSPRPPFGGSASTLWAQPARHSNRNRNLETAFLLTCGDFPYPELRDKLKRSQPASSISLPCPIRIRSVLNSLPDAFGFRRGHGHKTRFPLAARQSRPILEPPLPFRVSPPPDHNAQSDSDREVYLGKTPDIPLLPERINE*
Ga0066493_154596	Ga0066493_1545961	F011719	IIPGDWGKAGSGWLAQPLLSRIARFGSGGRIHQSLWQRSRAVSVREKGTERRGAIRNRCKPSQVVQAGFEPGRIAVTQRVSGCYCASARAGGSGGLRKEVCQMKDAERRDKVSARTGKDTRPRQDP*