3300004535: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 56_HOW8 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004535
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111190 | Ga0066526
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 56_HOW8 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32486012
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006133	Metagenome / Metatranscriptome	380	Y
F037232	Metagenome / Metatranscriptome	168	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066526_125156	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	595
Ga0066526_154141	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066526_125156	Ga0066526_1251561	F037232	FGIFDSVNTSYGPGYISAIRDDCYVVLLINWALAQGQSPTLYLQKESITAIPGAFPGTTVKTTYGPARISAIRSDGVHIARPINWKLANDTTATLYLQPETVELHQTPGFEEGDEVMTVYGQGFIKNKRSSGDLVVLLRNWALAQGQSPTCFLSPTACVKIPGLKVGAIAKTVWGLVKVLSIRRDGTHVCEAVHWKL
Ga0066526_154141	Ga0066526_1541411	F006133	MKSTLLRMRPVLLVCMIALLVAPLLSAIVQSAGPERRAQDVEDCVACRYIWLQVEMDVGNSQIEENIYDSFTANCIEAQKAPIFYPACQDMFDGIDDMIGDYMDGYTVNQVCENARLCR*