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Sample 3300004454
3300004454: Stalagmite microbial communities from Echo Passage, Kartchner Caverns, Arizona, USA
Overview
| Basic Information |
| IMG/M Taxon OID | 3300004454 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0114289 | Gp0110142 | Ga0064592 |
| Sample Name | Stalagmite microbial communities from Echo Passage, Kartchner Caverns, Arizona, USA |
| Sequencing Status | Permanent Draft |
| Sequencing Center | 454 Life Sciences |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 136505679 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Stalagmite Microbial Communities From Echo Passage, Kartchner Caverns, Arizona, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Unclassified → Unclassified → Unclassified → Stalagmite → Stalagmite Microbial Communities From Echo Passage, Kartchner Caverns, Arizona, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | terrestrial biome → stalagmite → rock |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information |
| Location | 2980 Arizona 90, Benson, AZ 85602, United States |
| Coordinates | Lat. (o) | 31.837801 | Long. (o) | -110.350292 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F002666 | Metagenome / Metatranscriptome | 539 | Y |
| F009387 | Metagenome / Metatranscriptome | 318 | N |
| F015813 | Metagenome / Metatranscriptome | 252 | Y |
| F019464 | Metagenome | 229 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0064592_1176650 | Ga0064592_11766503 | F002666 | MRRFGRQCRGQGKVFVTLVRQTEKQLLETGQPVLPLAQAAQACVQSAAHLAEDQRARLATTLTAALAAHHQIATQSRRLTTGKPLTQCKIVNAYDPTIAPICKGKSNCPTQFGRKPGIIAEPASGFIFAFQLPVGNPSDASYVMPLVDKVQHALGRVASRPTLAIHSLAGDLALNDPTVRQTLHARGILTVGIPHTVEPLPPSPTPAEVRQMLTAAGLHSKRTPHQVQLACACGYSRPVIESIIASLLCRGAARISYKGHRGAIIHTGMAIMAHNAATLVRIHQQQLSKRAQKFRRLLRLKHHNVNQFKVSKN* |
| Ga0064592_1265369 | Ga0064592_12653691 | F009387 | EEPVIYPAFVLAKFDTLRDEVLSRLGLHRGFPPRNEKRKRKEYAEALLRAFLPQTLSQIRGGKVAGVSMDQAAYFLSWVKTERPEGMEAVGAPKIIRTGFRPGGGGDPDFSYDEYVEFIEHFRDLAHKIPDEVLEAEKVQAAATLT* |
| Ga0064592_1269761 | Ga0064592_12697611 | F019464 | MAAFLRVLGIVVVATGLGTAAAAGWLLAGDAHFREVSAAYARHPEHALFQAEYVAAAARHYGLLAGVVGGLLGGLALGGMLLALGELLRRIPRG* |
| Ga0064592_1278532 | Ga0064592_12785321 | F015813 | KTMTTLSHTLRAKCRKALLAGVALSVLLTPTFARSAEREGSVLFFSLEDLQQVLSHPSLPSFSQLLPSFEWRERPEAGEQDGRLERNSRWGNGLGIDGYTRPGTRPLWGY* |
