3300004336: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4C

Overview

Basic Information

• IMG/M Taxon OID: 3300004336
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110188 | Gp0091631 | Ga0066242
• Sample Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4C
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 37414647
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Spongiibacteraceae → Spongiibacter → Spongiibacter tropicus	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → intertidal zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016975	Metagenome / Metatranscriptome	243	Y
F043157	Metagenome / Metatranscriptome	157	Y
F067247	Metagenome / Metatranscriptome	126	Y
F094910	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066242_1000502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1284
Ga0066242_1000650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Spongiibacteraceae → Spongiibacter → Spongiibacter tropicus	1176
Ga0066242_1003560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	704
Ga0066242_1008629	Not Available	528
Ga0066242_1009139	Not Available	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066242_1000502	Ga0066242_10005022	F043157	MGGERLMSILDERFRDCICLKIYDRTDSMRVLGELIMIKGAKSLERRIR*
Ga0066242_1000502	Ga0066242_10005023	F067247	VRKLLSIGIVLALLVTFIVPVAVAAQDECEDPCEWTPPDCAPMPDRTTKTLAGAAMWTMLGVTDVMGKAVCATTGLLACNLGGWSDELGVIAVDVTGTAMDGVAGLLEYVFESFLGMGELGTAVGD
Ga0066242_1000650	Ga0066242_10006503	F043157	MSILDERFRDCICLNIYDRINSMQMLGELIMTNRAKSLERR
Ga0066242_1003560	Ga0066242_10035601	F043157	MSILDERFRNCICLSIYDRIESMRMPGELLMIKRAKSLERR
Ga0066242_1008629	Ga0066242_10086291	F016975	MDVSSPGSQAGGATTSSVEPKASLNFSDRKALDGPAMRPETPFAVENGVGKLAAH
Ga0066242_1009139	Ga0066242_10091391	F094910	VRKLLSIGIILALLVTFMVPVVVGAQEECENPCDYDPPECGPLPPKTTKTLAGAAVWTYLGVQDIMGRAVCATTGQMACNLGGWSDELGVIAVDVTAAMLDGVAGLAEAAIGQFLPDFAELGASVADMLRGIAGAIGGTAEE*