3300004334: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4B

Overview

Basic Information

• IMG/M Taxon OID: 3300004334
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110188 | Gp0091630 | Ga0066241
• Sample Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4B
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35705239
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → intertidal zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F007847	Metagenome / Metatranscriptome	343	Y
F016975	Metagenome / Metatranscriptome	243	Y
F023129	Metagenome / Metatranscriptome	211	Y
F082867	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066241_1001835	Not Available	869
Ga0066241_1002562	Not Available	776
Ga0066241_1002684	Not Available	765
Ga0066241_1003290	Not Available	712
Ga0066241_1005228	Not Available	613

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066241_1001835	Ga0066241_10018351	F082867	VQYRVVKPLTFTSNSLLLAVNPTLTDLSNTLASIYRQYRVTELSFTFQASDVAGAYALAMQYVPQVGGSPSAPPTTLSEFEGPAVGYCETGRGREYTFTVPSHVLNAMGLNYYSTRTNVSPSQDPDVITQGLMVFLTSTPTTPIIAYMHVKFEFQTLEDPSFLANLVNREENEAKDSIIVPRVTKSPGGELWN*
Ga0066241_1002562	Ga0066241_10025622	F007847	VKRAERPHSKSSRRKALDGPATRPKTPLAVENSVGKLAAAERQMPAW
Ga0066241_1002684	Ga0066241_10026841	F023129	MSLKDTAGLRTKGNLRGKRSDPSHGANAPPSAVADPALSGQDAHRQSQTCLDLVRKPVAQPSAQAG*
Ga0066241_1003290	Ga0066241_10032901	F023129	MVKTLPLACESKGNLRVKRRDPWHRANAPPEAVADLELSGEDADRQSQTCLNLVRAPVAQPPVQAS*
Ga0066241_1005228	Ga0066241_10052281	F016975	MDVSSPGSQAGGATTSSVEPKASLNFSDRKALDGPAMRPETPFAVENGVGKLAAHQGA*
Ga0066241_1007788	Ga0066241_10077881	F000203	HALFPVLTLGAVQAASFPTPFSTASGVSGLIAGPSSGSRQLDFE*