3300004333: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3C

Overview

Basic Information

• IMG/M Taxon OID: 3300004333
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110188 | Gp0091628 | Ga0066237
• Sample Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3C
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28105712
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → intertidal zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002557	Metagenome / Metatranscriptome	548	Y
F014854	Metagenome / Metatranscriptome	259	Y
F023129	Metagenome / Metatranscriptome	211	Y
F030135	Metagenome / Metatranscriptome	186	Y
F043157	Metagenome / Metatranscriptome	157	Y
F067247	Metagenome / Metatranscriptome	126	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066237_100586	All Organisms → cellular organisms → Bacteria → Proteobacteria	1087
Ga0066237_101221	All Organisms → cellular organisms → Bacteria	899
Ga0066237_102018	Not Available	755
Ga0066237_103372	Not Available	632
Ga0066237_103398	Not Available	630
Ga0066237_103471	Not Available	626

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066237_100586	Ga0066237_1005861	F043157	VDGDIPMSILDERFRNCICLSNYNRIESMQMLGELIIIERAKSLERRIR*
Ga0066237_101221	Ga0066237_1012211	F067247	VKKLFSIGIVLALLVTFVVPVAIAAQDECCEWTPPNAVPLPDRTTKTLAGATMWTLLGVTDIMGKAVCATTGQMAANLGGWSDELGVIGVDVTVAALKGIGGLIDGVIGQFLPDFADLGAGVVDLINGIADALAGATEG*
Ga0066237_102018	Ga0066237_1020181	F030135	KVREELATLSSFTDIWHSTFAGRQFPDAILPGREAIDLVAGPLN*
Ga0066237_103372	Ga0066237_1033721	F014854	SRLTPAVSRIIPGDWGKAEPGWLAGPLLSRIARSGGGGRIHQFLWRRSRVVSDATRNLAVRRDKKPRQAESSSPSWFRVWANRSYPEGIRLLLCISTGRVTLADSINRLDPPSESHRKVNKGSARAGKDTGTRQVP*
Ga0066237_103398	Ga0066237_1033981	F002557	VLMHIATEYPLGNCDSPRLETGPGYLTRFEAASYRSLSLSPFFAFTDSARTPPEELV
Ga0066237_103471	Ga0066237_1034711	F023129	MVKTLPLACECKGNLRVKRRDPWPRANALSKAAADPELSGQDAQQPSQTCLDLVRKPVAQPPAQAS*