3300004331: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2C

Overview

Basic Information

• IMG/M Taxon OID: 3300004331
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110188 | Gp0091625 | Ga0066232
• Sample Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2C
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28768163
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → intertidal zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001024	Metagenome / Metatranscriptome	803	Y
F001346	Metagenome / Metatranscriptome	718	Y
F001758	Metagenome / Metatranscriptome	640	Y
F007847	Metagenome / Metatranscriptome	343	Y
F011154	Metagenome / Metatranscriptome	294	Y
F011719	Metagenome / Metatranscriptome	288	Y
F043157	Metagenome / Metatranscriptome	157	Y
F054015	Metagenome / Metatranscriptome	140	Y
F082867	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066232_102077	Not Available	794
Ga0066232_102171	Not Available	782
Ga0066232_102219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	777
Ga0066232_102656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	728
Ga0066232_103438	Not Available	667
Ga0066232_103499	Not Available	663
Ga0066232_103572	Not Available	659
Ga0066232_105475	Not Available	570
Ga0066232_105607	Not Available	566
Ga0066232_106228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066232_102077	Ga0066232_1020771	F082867	ITVQYRVVKPLTFTSNSLLLAVNPTLTDLSNTLASIYRQYRVTELSFTFQASDVAGAYALAMQYVPQVGGSPSAPPTTLSEFEGPAVGYCETGRGREYTFTVPSHVLNAMGLNYYSTRTNVSPSQDPDVITQGLMVFLTSTPTTPIIAYMHVKFEFQTLEDPSFLANLVNREENEAKDSIIVPRVTKSPGGELWN*
Ga0066232_102171	Ga0066232_1021711	F007847	VKRAERPHSKSSRRKALDGPATRPKTPLAVENSVGKLAAAERQMPAWER
Ga0066232_102219	Ga0066232_1022192	F043157	MRILDERFRNYICLNIYDRIDSMKMLGELIMIKGANSLERRIR*
Ga0066232_102656	Ga0066232_1026561	F043157	MRILGEHFRDCICPNIYHRIDSMQMRGELIMIKWAKSLERRIR*
Ga0066232_103438	Ga0066232_1034381	F054015	LPLCASTVPVTLAVPRERDLPNERRPTAGQSEHARREGHEVSAGSVKTFRNVGDVEMSTAGL*
Ga0066232_103499	Ga0066232_1034992	F001758	VTGERLGQAGWLNPSKAESKGKVEEAGFTSSSGGVRAPSVTRSVELNGEER*
Ga0066232_103572	Ga0066232_1035722	F001024	MRPTTPLAVENGVGKLAAHLRRLMPARERERGELPPPKFV
Ga0066232_105475	Ga0066232_1054751	F011719	RIHQSLCRRSRAVSRREKGTER*GAMRSRSPTSQVARAGFGPERIAVTQRVSGCYCASARAGGSGGFREEVRQTKDAERRDKLSVRTGKDTRSRQDP*KPSEPSAMLQTIPLTCGPKATRELRGETRGTGPTRGQKPRPTRR*
Ga0066232_105607	Ga0066232_1056071	F011154	VRACLTRMRNLAARSDKKPFRTESSNSSWFRT*VNRSYPEGIRLLLCVSTDGRLWRSPRGGQPNERRRKAGQRERTNREGHAVSAGPVKTFQTAGDVKNGTAGLRTKSNLRVKRRDPWPGANVPSRAEADPELSGQDAEKKSQSCLDLVCEPVAQPPAQAS*KASLEIQTPQGAGRPCYEAADSACRG
Ga0066232_106228	Ga0066232_1062281	F001346	VKTFRNAGDITNDTAGLWTKGNLRVKRRDPWHRANALPEAAADPALSGEDADKKTQTCLGLVRKPVAQPSA*