3300004327: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2B

Overview

Basic Information

• IMG/M Taxon OID: 3300004327
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110188 | Gp0091624 | Ga0066231
• Sample Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2B
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26629410
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → intertidal zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016975	Metagenome / Metatranscriptome	243	Y
F018005	Metagenome / Metatranscriptome	237	Y
F020700	Metagenome / Metatranscriptome	222	Y
F023129	Metagenome / Metatranscriptome	211	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066231_103869	Not Available	625
Ga0066231_103951	Not Available	621
Ga0066231_104969	Not Available	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066231_103869	Ga0066231_1038691	F020700	MAARHSLHLRFARFDPETSPSVFSDAAAGIAATSIRLNFTVLFQVVRPEKAR
Ga0066231_103951	Ga0066231_1039511	F023129	MKGNLRDKRRDPWHRANALSKAAADPALSGQDANKQQQTCLGLVRKP
Ga0066231_104969	Ga0066231_1049692	F016975	VVKTRRLITDVSWPGSQAGGATTSQSELKSLTQEFSSGNALDGPATRPKTPLAVENSVG
Ga0066231_106477	Ga0066231_1064771	F018005	EKALKSGIDLQEESVNLWKSLLTQLGSPEEFQAKLESMQSEAFPTARKRMEEFIELFNRSSNQTMELFEKSMKVYQAKSVTDAQRRLQDLMESSLETLRGNVQTALNTNAKIVSSWKDIVDRLKSSTKK*