3300004326: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2A

Overview

Basic Information

• IMG/M Taxon OID: 3300004326
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110188 | Gp0091623 | Ga0066230
• Sample Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2A
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26770101
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → intertidal zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016975	Metagenome / Metatranscriptome	243	Y
F030135	Metagenome / Metatranscriptome	186	Y
F042356	Metagenome / Metatranscriptome	158	Y
F043157	Metagenome / Metatranscriptome	157	Y
F067247	Metagenome / Metatranscriptome	126	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066230_101107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	979
Ga0066230_102565	Not Available	732
Ga0066230_103567	Not Available	650
Ga0066230_104110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	618
Ga0066230_106747	Not Available	518
Ga0066230_107196	Not Available	505
Ga0066230_107224	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066230_101107	Ga0066230_1011072	F043157	VVGDRLMSILDERFRDCICLNMYDRIDSMQMLGELVMIKRAKSLERRIR*
Ga0066230_102565	Ga0066230_1025651	F016975	VSWPGSQADAANTGRSELKSLTRESSGGNALDGPATRPITPLAVENSVG
Ga0066230_103567	Ga0066230_1035672	F030135	KNREELATLSSVTDIWHTTLVGRQFPDAILPGTEAFDLVAGPLD*
Ga0066230_104110	Ga0066230_1041102	F043157	MGILDERFRDCICLNMYDRIDSMQMLGELTMIKRAKSLERRIR
Ga0066230_106747	Ga0066230_1067471	F067247	VRKILSIGIVLALLVTFIVPVAVAAQDECEDPCEWTPPDCAPMPDRTTKTLAGAAMWTMLGVTDVMGKAVCATTGLLACNLGGWSDELGVIAVDVTGTAMDGVAGLLEYVFESFLGMGELGTAVGDLLRGIAGALQGAAE*
Ga0066230_107196	Ga0066230_1071961	F042356	LDESQLPRGYPVATVHQHGAGDSGGFNKPFETAQQKHRKVKQKERPYREGHEDSAGPVKTFRKSAMLKTTPLACERKAT*
Ga0066230_107224	Ga0066230_1072241	F067247	VRKLLSIGIVLALLITFIVPVVVAAQDDECCEWNPPPPVELPDRTTKTLAGATMWTLLGVTDIMGKAVCATTGQMAANLGGWSDELGVIGVDVTVAALEGVSGLLEFVMAEFLGMADLGTSLAELINGIAEALAGATAA*