3300004321: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3B

Overview

Basic Information

• IMG/M Taxon OID: 3300004321
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110188 | Gp0091627 | Ga0066234
• Sample Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3B
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18762773
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → intertidal zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001233	Metagenome / Metatranscriptome	741	Y
F001346	Metagenome / Metatranscriptome	718	Y
F001758	Metagenome / Metatranscriptome	640	Y
F006508	Metagenome / Metatranscriptome	371	Y
F023129	Metagenome / Metatranscriptome	211	Y
F026580	Metagenome / Metatranscriptome	197	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066234_100686	Not Available	784
Ga0066234_100958	Not Available	701
Ga0066234_101270	Not Available	645
Ga0066234_101372	Not Available	630
Ga0066234_102883	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066234_100686	Ga0066234_1006861	F023129	MVKTLPLACESKGNLRVKRRDPWHRANALPEAVADLELSGEDADRQSQTCLNLVRTPVAQPPVQAS*
Ga0066234_100958	Ga0066234_1009581	F001758	VTGERLSQAGWLSPSKSVSKGMKAEAGFTSSSGGVRASSVYAKKELRG*
Ga0066234_101270	Ga0066234_1012701	F006508	VALANALSKAVADQSQVVKTRSKHCRRVLTWFASRWRNHQPKR
Ga0066234_101372	Ga0066234_1013721	F001346	VKTFRGVGGVKNGTADLWTKGNLRVKRRDPWPRANALSRAAADPELNGEDAAKKTQTCLDLVRKPVAQP
Ga0066234_101372	Ga0066234_1013722	F001233	RWKAAVERLRLHVSEIIPGDWGKVESGWLGQPLKSRIARSGGGGKIHQFLWRRSRAVSKREKGTER*
Ga0066234_102883	Ga0066234_1028831	F026580	MRNRSESSQVVQAGFELGRIAVTQRVYGCYCASARTGGSGGLRKEVSQMKDAERRDKVSVRTGKDTRSRQAP*
Ga0066234_102883	Ga0066234_1028832	F001346	VRTFREVGDVKNDTADLWTKSNLRVKRRDPWHRANAPSKAAADPELSGEDADTNTQTCLDLVRKPVAQPPVEA