3300004318: Marine microbial communities from Galveston Bay (MSEDA13C- fraction 7)

Overview

Basic Information

• IMG/M Taxon OID: 3300004318
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111382 | Gp0110218 | Ga0065202
• Sample Name: Marine microbial communities from Galveston Bay (MSEDA13C- fraction 7)
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20226750
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine benthic feature → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Galveston Bay, USA
• Coordinates
  • Lat. (^o): 29.5
  • Long. (^o): -94.76
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009657	Metagenome / Metatranscriptome	315	Y
F034976	Metagenome	173	Y
F050381	Metagenome / Metatranscriptome	145	Y
F053661	Metagenome	141	Y
F076930	Metagenome	117	Y
F078289	Metagenome / Metatranscriptome	116	N
F085724	Metagenome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0065202_1185988	Not Available	743
Ga0065202_1187771	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola	1076
Ga0065202_1187821	Not Available	1090
Ga0065202_1188457	All Organisms → cellular organisms → Bacteria	1385
Ga0065202_1188480	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1401
Ga0065202_1188883	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1661
Ga0065202_1190094	All Organisms → cellular organisms → Archaea	4609

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065202_1185988	Ga0065202_11859881	F078289	PKMRELGVSQEVIQYFISNQTSSVSSEDVIKMKQAGLNNDDIMSAIQSDLYRPEQKTTSMKEVELIAKLKESGMSDEAVLQFIQAVKSTRRVDSDGNIIQQNTNESQRTPYPTEGATFPKPDNYGYDPVNGRFLLLVKPQN*
Ga0065202_1187771	Ga0065202_11877711	F009657	LIGIKEYEILYDTGEATKLVAQVNRMAKEGWQAKSIGALGAPTGIRAVYVLMELEVG*
Ga0065202_1187821	Ga0065202_11878211	F034976	MRGAQPVRCQKCGKPVGYVTALAKGVLGLQQPLQNAKVVALCMECAQKRT*
Ga0065202_1188457	Ga0065202_11884572	F050381	MKKLVVVVAIVLLPCIALASFSLKLDNNTGKKMVYMLYWIDHHYDWPYPFNMAGGELQARQTVDLRENLQTGKYCVIWNNKEGWQNKVMLDVNDTVKSVTVTPIKSRMNQ*
Ga0065202_1188480	Ga0065202_11884802	F076930	QGYEIANRTQIDESIPKEAFVDSVLEAVLDSLESTVLKTISHELDLMNKKYPAFDSWKVFADAVMEGAGENFWDRVGNEE*
Ga0065202_1188883	Ga0065202_11888831	F085724	MKTMSAILMVLGMTAVYSPESIIPKYFIDEKPQGEYFIYDSKQLVVPKYIVKPEPRGRGYRVYETGKPVLPVYRIERKDALQ*
Ga0065202_1190094	Ga0065202_11900942	F053661	VGKVVDMKDYYQTNKGRLLGIGGILIIVGLVLYFARGQEVVLVLPIVGIVLFIAGVLYKPRKKTQQEN*