3300004275: Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (version 3)

Overview

Basic Information

• IMG/M Taxon OID: 3300004275
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093344 | Ga0068531
• Sample Name: Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (version 3)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 122112554
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	5
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → waterfall → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006183	Metagenome / Metatranscriptome	379	Y
F007033	Metagenome / Metatranscriptome	359	Y
F020180	Metagenome / Metatranscriptome	225	Y
F023604	Metagenome / Metatranscriptome	209	Y
F081382	Metagenome / Metatranscriptome	114	N
F090019	Metagenome / Metatranscriptome	108	N
F096328	Metagenome	104	Y
F099358	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068531_1002010	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2648
Ga0068531_1017143	Not Available	876
Ga0068531_1020533	All Organisms → cellular organisms → Bacteria	799
Ga0068531_1035912	Not Available	592
Ga0068531_1036578	Not Available	586
Ga0068531_1042481	All Organisms → cellular organisms → Bacteria	541
Ga0068531_1044114	Not Available	529
Ga0068531_1048044	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068531_1002010	Ga0068531_10020102	F099358	MRRDEVFKALHQRLAPSNYYALDADLILVEKIPPATVYVVAHLEFKMGAEPITFTQAVYFNQMVSAPMPWRVPVYIIRAREPYDLPPKGATRLSYDYCQHARETHRYDVVEYLYADWKPDPPCVSVATIAEDIGWRELVEWERELRRARREQLAPYIDAGWQTRHETTQLQMKRVG*
Ga0068531_1017143	Ga0068531_10171431	F007033	MQCRCGQPLWALGIPDCHPVLRPIRRIAFETNLEESRNPASFDLVNSTDYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVGPEAASPIPIEPGTIQVRLLFPSDTTITKYEFSFDFAQSLMDFEFVPVFANAGLLNYMPRIAALLVATWNAPGLFVSVYAFYARSAGDLYIPISGLAAFLEVRDNANTLITTNFAEV
Ga0068531_1020533	Ga0068531_10205331	F023604	MAMDIRGPKAAVKSRALEKAVLKGMRPPAGEEEEKPRQAYAKDKNLCPAKIDYISN*
Ga0068531_1035912	Ga0068531_10359121	F006183	MVRTLAEELKLDDRLFGKPLTSTVAAPIMLYSIGVIGVFTQTVWLSVPAAEVRVMAVLGCTMMVPVAVTSPQGPDTSTV*
Ga0068531_1035912	Ga0068531_10359122	F006183	MVISPYKGSKLDDRPFGKPVTCTVAAPIVLYLIGVIGVFSQTVWLFVPGAEVSVMAVLGRTVMVPVAVTFPQPPVKITV
Ga0068531_1036578	Ga0068531_10365781	F096328	MTEAAYFFSKEAEVILAPYVQVLVGAEKPPQISSPLLAESWDYAFDDLLVDLKLTLKARIYGKVSDQTLADIRKSLENGVLVAVLVPPKLYLLLPSDITWDGSVESLHTRPSILLPKKVLEQVWELYERMTN*
Ga0068531_1042481	Ga0068531_10424811	F081382	MSKHGEGLEIAIVPAGGQAKQVVQRALGKRRAHIRVHSLCDIADASAPMLVLIDGSALQGGESALAGAITMLKQSAWRDAPIVILDDSGADLRRGFAAGYAARIRLDSSPEAIAQLIEKMMHT
Ga0068531_1044114	Ga0068531_10441142	F020180	MSYDAKRWYVARCSCAKPILYQERDRYPLRCARCGGHVYAEPRPPHFDRLTPTPIVDFRAILRVLGWCVLAVLGYIALCIYFIVLGEL*
Ga0068531_1048044	Ga0068531_10480441	F090019	RPFPLHNLAYTEFYRMNTDDFTGRTIFGLLRDFSDRFSAEIPHNIEIAYSGFMGLDRQAIEFSPAKVKTQASKLDGLASFLNRILGAARHIVRSVRVPEPMPPGNIIVGSDYFAAKIIMAEGLTGLDANAETALHQFIADRYQKKLAQVYEGVRIPFTEQDYTNLAQQ