3300004196: Groundwater microbial communities from aquifer - Crystal Geyser CG12_big_fil_rev_8/21/14_0.65

Overview

Basic Information

• IMG/M Taxon OID: 3300004196
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111384 | Gp0110937 | Ga0066641
• Sample Name: Groundwater microbial communities from aquifer - Crystal Geyser CG12_big_fil_rev_8/21/14_0.65
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1082144179
• Sequencing Scaffolds: 29
• Novel Protein Genes: 33
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
Not Available	11
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	4
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium CG_4_9_14_0_8_um_filter_57_21	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1
All Organisms → Viruses → environmental samples → uncultured archaeal virus	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Utah: Grand County
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001003	Metagenome / Metatranscriptome	808	Y
F002857	Metagenome / Metatranscriptome	525	Y
F003235	Metagenome / Metatranscriptome	498	Y
F008219	Metagenome	337	Y
F014357	Metagenome / Metatranscriptome	263	Y
F014684	Metagenome / Metatranscriptome	261	Y
F015419	Metagenome / Metatranscriptome	255	Y
F016112	Metagenome / Metatranscriptome	249	N
F016358	Metagenome	247	Y
F016496	Metagenome / Metatranscriptome	246	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066641_10019496	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3037
Ga0066641_10080325	Not Available	1463
Ga0066641_10096805	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	1322
Ga0066641_10110775	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	1227
Ga0066641_10139064	Not Available	1081
Ga0066641_10214021	Not Available	842
Ga0066641_10216414	All Organisms → cellular organisms → Bacteria	836
Ga0066641_10216970	Not Available	835
Ga0066641_10221886	All Organisms → cellular organisms → Bacteria	824
Ga0066641_10235676	All Organisms → cellular organisms → Bacteria	795

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066641_10019496	Ga0066641_100194963	F043249	MPKIVGTRERVHQPFYDSLIRVDGSGDLRQGNVGVFGAVQSRSQLFVRQGADVAVSNLTTGGFFPSDQTFVTLAVRVWTYFRFNVESQRTDAQNTTGPVASLAGVTADRIQRVHKLYHQAENQLFWQFIAGDKPQLTTFTAYTPAAGGLDGFFSDTRLPRANNGVPTSAALMRLARPILVPPRQGFQVVAIASPIGQAQGASIIEQLNGAVPNNDPWGASSTGGTVTGTVGTNGLTTTGRDDIEKDIKYLIDGIHSRDVL*
Ga0066641_10080325	Ga0066641_100803252	F008219	MPKYLVEIILVVNAKDSDEARKIADYVIDIPISDSKVENTIETLRCEEIVEITNPKLR*
Ga0066641_10096805	Ga0066641_100968051	F076867	MDEKNQNLVELAKKKRYIALVEKLGRGSLGPKELKELEEFEKVEQAKETGVIDGAVDLGTISIYLEKSSRMVRRYVSQGMPVIRDSSGELSRFKVNDVFKWVYGNKGKDTEDKDYWENEYRKNRAKLSELELKQKEGELIPFADHVSVVKNQIRGIRAGLLRLPKHVAPKLYQQDPKLICEMLDQEIRYIINQFAGVKSNDKANKRGA*
Ga0066641_10110775	Ga0066641_101107752	F016358	MTEIKNIAQANKSWAKQSPAIKYVILKRSNSKSDIFVLEE*
Ga0066641_10139064	Ga0066641_101390641	F039194	IFKTQVGMFDPVALQNHNVCIHYVQKSYYRKVDFLEGIPAFQCIDITAGAGLAALMVTGRVNVTNLEMADNEFGLWRWYPIDDAQVRLYHPAGIAKYQLRNLQVPVDMNIVLRDPNLVSTEIAVWQNNRPGVEAINGHAFALGAVRLIAIGYRFHSVDLESGKDADPMLVKAIKEGKAPCTDIWCSGRGTGD*
Ga0066641_10214021	Ga0066641_102140211	F096722	VNNKEKAYIGPVEQEINSLMETAGNEIMDLTQEGPDRNITEKIQNIYITNLSKCIIYLAKQFDKLAGSIK*
Ga0066641_10216414	Ga0066641_102164143	F021710	FFVRAIRRGKSNPSLTEFRLCKEFGWTPQQLRKTPAKTIQEFIVILNEVDRQTQEEMDKAKREAKLR*
Ga0066641_10216970	Ga0066641_102169701	F016496	MEDKKKEDKYFFKKGNKYQQKGSAGLRYGGTTPVAKDKEKNLERLRCGWKPKTLICKDITISDDEEAFAVEFSKKVSEENDTYVDTFLIELAIAQILQVHRVYVYAKEKKISRDASRMIGTVLSTLREMNATKNARKEDNIKVTVNSDIMTLIQQNLNLISNDESKKGNNIDKK*
Ga0066641_10216970	Ga0066641_102169702	F088269	IYRKNNGVYELFPIQKLDILSNEITFQTDIGENYDMIVEYFEDNFHFSIDTLSDASSLFAAAMCMRSLPLTSQTNNDAKEYERRAKEIITRSSASFV*
Ga0066641_10221886	Ga0066641_102218862	F079376	MFDIVITRQPGRPCVSLEVTRVCRTTEEGERQMRHRESDSFVVPEKAGNAAGGKEATHVSAL*
Ga0066641_10235676	Ga0066641_102356761	F059646	VFHLKLESITVVILVICIFLSFYFTFLSFQTIDDTLKKQLVTLAASSLITGVIMLACITISLGIKKAFPRVDSKLRSRKEPSEHEG*
Ga0066641_10248157	Ga0066641_102481571	F049070	MSTATLSEPMKERWRTAGRFADVLEAEVKSRQHPFVARVVSWFNLCRVCQDLEEQLLLAQKPSAEDKQLHAALLSTAIASGEGLLLEGADAETLRPLKLTPQALQAKLVSLRITYEQWHTELNPQ
Ga0066641_10262564	Ga0066641_102625642	F100376	MKLAPELRFLCNKIATERTRPALWKTAAELRKDCTRVLASGQTLADAQTWLESLLADALAAQSKS*
Ga0066641_10278574	Ga0066641_102785742	F100367	MSSCIFSSFYGSDLNRDVMLSLVWSVFLTEVDEDVRFERDSEWLSRHYRDLQVDYPNKYVAVLDERVVGVGDDGEKLYVEVVGKHGRDPVIDFIKDTKTIQVGRLRARVLV*
Ga0066641_10280512	Ga0066641_102805122	F029929	MVLLGLPIFQQSVDAALYEWLMRELKRRGARTVQDVIRQILREAKAEAEKHG*
Ga0066641_10288627	Ga0066641_102886272	F086591	MSLKKHLAKRYIPSSTKWKLVLKGVGKLYRAVYDELEKDEKGSSAKALADASYRVGLDFGETLKKDFGLGNSIEDIAFAMEIDHKIFGVKAVVAEKDERKIVYHCYQCAWRKYFTPKLCIAIGQAEKGIAHALNSEAKYN
Ga0066641_10309972	Ga0066641_103099721	F048100	DNMKEKSDDIDRMNLEFYGMVRKTYGTQTIFEQHRTTIKIDTFRRDIGKRWAENMRKREEIYEIIDMLYELAKIETENPDAERSKQMSWAEVRKKIQEKMVKTLSR*
Ga0066641_10344590	Ga0066641_103445902	F015419	MKYEFKITDEAGNVFLYDVSRSSSDEEKSLNDFILEALHISEDKRKLPFKIQCPNNLEVYPLLKMKFENYGSPLLGDKLEAMHVTWRD*
Ga0066641_10386351	Ga0066641_103863511	F001003	MILLIQMKKITMEKFKKFKIENKDFVLPQNLSAKEKDIFMYIFRLLRQKVNKGIYPELFNNEIIYSKSDMKNLISKGIIIFMQHKKGWVITINPTFSTKN
Ga0066641_10411944	Ga0066641_104119441	F002857	MENKKRIWGTRETDEAYDEMIRTEKEKQNGNVFKDDDKKEMKASMKFLSNKNFIERISLRDGMKRKFKLVKDEATEIIGFDGNAKQGITYTVMENGNIRSFFTTSLKCISMLSRLQKDDVFEIELRTKKVGDTLISYHVVKKL*
Ga0066641_10419862	Ga0066641_104198621	F003235	IIYSKSDVKNLISKGIIIFMSYKKGWVLTINPTYVTKNVECSWCGAKFNEKIYFRMKRMRCPSCMSGMNGSTIAEKFETDDIIFPTKVENKTQIKKITNDIEIVRTGIQKIIQQSKEKIIPFRSSKADRLNAISELNRLAEKKKEERILTIQKKILANFSDTCVNFVKEYFCIYDNKIFSAMKYM
Ga0066641_10419927	Ga0066641_104199272	F091390	MKSTESTTIRINKSTKGLLDNLDFVRKDTYDDIIIKLMDYYKRKKG*
Ga0066641_10427345	Ga0066641_104273451	F068439	RVFFYTIENECFFEYYSYDNIKRYNKERTDFLSLLTDENKKKVYDFERKMHEKYPEYLYKMKNKKVTYPEYKNIKEYRISENYTVMFFTIGQHAIFRYFEDDGLIVYNEVDRSCVLHWLSGEETERLFNFEDEIKEEYSKYIF*
Ga0066641_10427764	Ga0066641_104277642	F042607	IQLYNKIVASYTNLTNKGEDLFIDLFETDDNGTIIFLKPPSKRQTSFEVFLFLMAVMQQQHIRLMYKQVEDLCAQVNEKLKDK*
Ga0066641_10429454	Ga0066641_104294542	F088316	MTLYRVREGYVVHLGNRQTLSPGTIFEPDQKVLESQGWKVEPVKEVEPVQEEPKPVTRDVEAPPQDRMIKKPPVKK*
Ga0066641_10452151	Ga0066641_104521512	F076874	AGNETYIGKSISGDDGRLEISKTALGGKGAKIVVRNAKRLSGEDIVQTSDGIYSTFIVSSDETVQTVEIVFQIKKKHNIRINVTWK*
Ga0066641_10455155	Ga0066641_104551552	F001003	MEKYKKFQTEYKKDFLLPCNLSQKEKDIFIYIFRLLRKKINTGIYPEVRNDEIIYSKSDMKSLISKGIILFQPYKRGWIITIHPTHITKNVECSWCGTK
Ga0066641_10462894	Ga0066641_104628941	F016112	KMWGSIEKVRNICGITKEQINDVVIHDILEQTDRKVRDRVYIFRRLTMQMNKIGTNKIRFDINKIGDGNRDTSIDYTDISIYRKNNGVYELFPIQKLDVLSNEITFQTDIGENYEMIVEYFEDNFHFSIDTLSDASSLFAAAICMRSLPLTETENNAKEYERRAKEIITRSSAS
Ga0066641_10473620	Ga0066641_104736201	F102531	KLEAIRQVGSVSVPDYAATPEQIAQLQLADKARTADEILQCPYTWCRHNSTVSDAILESRGYQPYRAAMMMQTTEGLSAGGHQVSAIIVNGEPVFIDLTNNLIIPGQQALEQILLNSGKQLTALEMIRLTTNNVWDVINLIPK*
Ga0066641_10483533	Ga0066641_104835331	F053063	MSKDKILARIELLKKQNDEDNTKLISLNQVRETVIQGMLVRNGRI
Ga0066641_10483900	Ga0066641_104839001	F014357	ADVNTATDTQITKKNNPSEFCDFPFRGGVATKRKIDLYGIVFSSRGADDGITAANYIRTNYIKLMKGRDVLFDSMRMGLFAAGRTVQTNNTFEAENGFDVGGEITDLYQKDPLIFDQPIRFANGEELDTYWTTEVATPPGTFLASELEIAYILKETQE*
Ga0066641_10485262	Ga0066641_104852621	F014684	MKITWHRYYYRIIGFALAGAGGGLLLDELIHGPFTLTPANHEFWGLAALVVGSILISKKPHGKD*
Ga0066641_10490820	Ga0066641_104908201	F034062	FKKFSAPKVKIELKLDEVAYDYKDKLTGRIVLDPQEEISVNEFRLEFGGNKKIKWKKGFSSLSSSSSLDTRKIPIGGPVKLQKGQHYEQPFQIDIPLYSKPDPFTENEVKVKGVAAVQGRPDLTHEVKPVINFPFVIECLRQYGGCGFITQPLSEPVKACLKCGNNLE