3300004127: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-8-D

Overview

Basic Information

• IMG/M Taxon OID: 3300004127
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088368 | Ga0008109
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-8-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 668558554
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus robur	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031319	Metagenome	182	Y
F105011	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008109_10126318	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	656
Ga0008109_10133820	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	641
Ga0008109_10160792	Not Available	594
Ga0008109_10211283	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus robur	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008109_10126318	Ga0008109_101263182	F031319	MHDGETLKAYLDRYCEMYNEMDDNFDDVAISTFKNSLSVGHGLRKSLTSKPATSVRQLMDRIDKYKRVEEDQL*
Ga0008109_10133820	Ga0008109_101338202	F031319	VFNEIDGDFDDVAIRTFKVGLLVEHGLRKSLTRKPANNVRQFMDRIDKYKWVEKD*
Ga0008109_10160792	Ga0008109_101607921	F105011	MLNLFEKENNDLKAKLKRSEDLYLQCLEDKMKLELKLADVVDGNEIKMDAMRLKIKRIRKYAINREAWYHYAVGSVFTLVAILIAFVVGFKFFR*
Ga0008109_10211283	Ga0008109_102112831	F031319	MHYGETLKAYSDRYWETYNEMEDNFDDVAIITFENSLPANHGLRKSLTGKPATSMRQLMDRIDKYKQVEEDQLQGRGKEKVIP*