3300004105: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 0.2 um filter (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300004105
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111384 | Gp0097057 | Ga0065182
• Sample Name: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 0.2 um filter (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 445606306
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → Candidatus Altiarchaeum → unclassified Candidatus Altiarchaeum → Candidatus Altiarchaeum sp. CG2_30_32_3053	1
Not Available	6
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022890	Metagenome / Metatranscriptome	212	Y
F029019	Metagenome	189	Y
F040819	Metagenome	161	Y
F043249	Metagenome / Metatranscriptome	156	Y
F069687	Metagenome	123	Y
F071959	Metagenome / Metatranscriptome	121	Y
F075685	Metagenome	118	Y
F076868	Metagenome	117	Y
F094905	Metagenome	105	N
F094906	Metagenome	105	N
F095532	Metagenome / Metatranscriptome	105	N
F096626	Metagenome / Metatranscriptome	104	N
F102531	Metagenome	101	N
F104462	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0065182_1004734	All Organisms → cellular organisms → Bacteria	5418
Ga0065182_1025375	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	2114
Ga0065182_1032357	All Organisms → cellular organisms → Bacteria	1827
Ga0065182_1042191	All Organisms → cellular organisms → Bacteria	1553
Ga0065182_1086339	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → Candidatus Altiarchaeum → unclassified Candidatus Altiarchaeum → Candidatus Altiarchaeum sp. CG2_30_32_3053	979
Ga0065182_1107348	Not Available	844
Ga0065182_1112611	Not Available	816
Ga0065182_1144421	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	684
Ga0065182_1162616	Not Available	627
Ga0065182_1165001	Not Available	621
Ga0065182_1188029	Not Available	565
Ga0065182_1199763	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	540
Ga0065182_1207147	Not Available	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065182_1004734	Ga0065182_10047346	F076868	LGILLAACIVGATFFLNGQRPSGEIKKDVSDNESALTANEPEVEQKSSATATTMSAGKVIIKAYLNLGGCGEEVINLLDGLVKEYQGRVSLGYIDFGTREGYNRMIEDGLNCQGLVINGKQTYAIIDKNGAQKEVTFSHPLNSQYTADDLKTVVKMLLGE*
Ga0065182_1025375	Ga0065182_10253754	F022890	LELRPNLLYTLLGAVIFKIMTTKKLVNLMMKSSDHNPYTGKLSESANVLAAIELAKKFKEFADEVYTDEAMGIESSQWVEVINKLEEKRLNCA*
Ga0065182_1032357	Ga0065182_10323573	F071959	MASRNYLVMSNDMTLSDKKEYRLNALSAGLERCGLRGIGDIKADIPGLAGIPDANKVARVKLIHNYLITGQWPRSIDQRELTTGTDLVVAPAVDSWLTAPMAAVGNIVSCFQGVAAPQLVQGKLMVCYAVSVESSAVPMPVSRLIFRRGAAGNVQAQFDMEPMGIRWEVDAFFSEVVVIDPQDVFAIQVRCRNATAV
Ga0065182_1042191	Ga0065182_10421911	F040819	MTKAQEIYEKVEALVATGVPKADAFRQVAEEFGQPFNSMRGAYYAHSRTITGGSSRPRRRQTTTADAVESAAQLLRRALESIDDEVLAAKARAEEAKAEYEALRDSVKE
Ga0065182_1066065	Ga0065182_10660654	F094905	MNALYGYIAVFVVIVFLGAGWAVEHDKRITYQAKVEQAGADALAQTEKINAKHREEMQNAEHNTIIATNSIADWYRAHPVVRVQNNGCSTMPGT
Ga0065182_1086339	Ga0065182_10863391	F029019	MKNTEICLSDCFKSEVSYRKILRQIDLLMYQIFEVKKTTNIFWDIRLKKSELARWISKGDSMWWKTAADDISERWKEIDKIKDEIDWTIGNMFASVEREEKQRMKKTEKDKH*
Ga0065182_1107348	Ga0065182_11073481	F069687	MEELAKKIESILSQFITEELGNRLSQFALISLKEMILNEIKSYEPKIKEK*
Ga0065182_1112611	Ga0065182_11126111	F102531	SILNLPNADNSAGWTLGTYGGQTIPIQPQKTIAQINQEIDNLVARGVDELEAIRQVGSISIPNYATTPEQIAALRLADQARTADEILQCPYTWCRHNSAISDAILESRDYQPYRAAMTMQTTEGLSAGGHQTSAIIINGEPVFIDLTNNLIITGQQALEQVLINSEKQLTALEMIRLTTNNVWDVINLIPK*
Ga0065182_1144421	Ga0065182_11444211	F104462	MAQNFKTLYIGNNTVHTLFEAPTTLTRVFFGIYIVAKGDPSFQVNVSFDNSQFLNPICLTYCRGYYEFTGPDISQGSIFVKTVNFAQGDICATEILK*
Ga0065182_1162616	Ga0065182_11626161	F095532	MNRQNVIVVIAPTLEVWGNFKNLCEAKGFDILPYHSLKSKPFPIIHKDWIIHKVPFL*
Ga0065182_1165001	Ga0065182_11650011	F102531	QTNVIQPQKTVAGINQEIDKLVANGVDKLEAIRQVGSVSVPDYAATPEQIAQLQLADKARTADEILQCPYTWCRHNSTVSDAILESRGYQPYRAAMMMQTTEGLSAGGHQVSAIIVNGEPVFIDLTNNLIIPGQQALEQILLNSGKQLTALEMIRLTTNNVWDVINLIPK*
Ga0065182_1188029	Ga0065182_11880292	F075685	MSNTTSTLYDPVTHPLAAAYAAASTAECRAAECRAARRQWVASDEERGYRLTVYRAVGLQHCDPVPRRRESPLRCRPSELWHRVNLWARAFAGEQEPQTEPYWLVCHAYPVHPRTGRSDH
Ga0065182_1199763	Ga0065182_11997631	F043249	MQSRSQLFVRQGADVAISNLTTGGFFPSDQTFVTLAVRVWTYFRFNTESPRDNGVAPPGNATVPIGSIPGLAADRTMRVHKLYHQAENQLFWQFIAGDKPQLTTFTAYTPAAGGLDGFFADPLLPRANNGTPTSAALMRLARPILVPPRQGFQVVAIASPIGQQQGASIVEQMNGMVRNI
Ga0065182_1207147	Ga0065182_12071472	F096626	ALLASSATKRMTSAMLLGMWRNSSKYVLDVAPKLAAMTGSQLLRYQANIERHEKRLAALCSRNPELSLSSADLDKIMVNLADEDADTAFGAYLADRTEEVRGKLTEDSEAL*
Ga0065182_1221248	Ga0065182_12212481	F094906	AVSNGDSKVYDVYMNVSSGQYRLVWKYFVANLPPGSQWTALYQKNGGGWYSWGSPTISYGYYYTAYTGSGWQTGDQLDVDFYNPSDRSETNIQDSILYSNQCF*