3300004093: Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-22 (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300004093
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110132 | Gp0095971 | Ga0065178
• Sample Name: Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-22 (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88678356
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cyanobacterial Communities From The Joint Genome Institute, California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Cyanobacterial → Cyanobacterial Communities From The Joint Genome Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 37.9313884
  • Long. (^o): -122.0239394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053413	Metagenome / Metatranscriptome	141	Y
F066275	Metagenome	127	Y
F072077	Metagenome / Metatranscriptome	121	Y
F080441	Metagenome / Metatranscriptome	115	Y
F089171	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0065178_100105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	106477
Ga0065178_100396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	41955
Ga0065178_100635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	26655
Ga0065178_101013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	14490
Ga0065178_106412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1410

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065178_100105	Ga0065178_10010561	F072077	MFLFFSNRLGCGGSLLVSLVITAILLIIFVFDLPPLGPA*
Ga0065178_100396	Ga0065178_10039622	F089171	MSSKSIPLGAQEREILQAIARTTARSGAAVPLSSTQRLRFEMLGLIEDRADGVRLTERGRAVAAAPAEAPPVTRELQPATPRDRRGRRLGLRRRSPF*
Ga0065178_100635	Ga0065178_1006359	F080441	MVRSRRLLPMLALGGCAVVNSAPSSQEVVQLRDVRDQCLMQNAIRLDDGRSDPQAIAASVVAACQSENQALITAIAGPDGFRQSEIARQIQQNSQQAATQYVLQVRAARTRS*
Ga0065178_101013	Ga0065178_10101314	F053413	MFLSPLRERLGEGVNADVSSCITPSPSLSPKGERSMNSLR*
Ga0065178_106412	Ga0065178_1064122	F066275	VNEAHFREIEKVLLYVSEARRKAERVAESIERDGAEPHLVAALRDAERDLAELHRRLMHGTYWAVPKEQLALVPEDGPGR*