Sample 3300004089

Basic Information
IMG/M Taxon OID	3300004089 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067861 \| Gp0093344 \| Ga0066183
Sample Name	Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300004089 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0067861 | Gp0093344 | Ga0066183

Sample Name

Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	132328296
Sequencing Scaffolds	25
Novel Protein Genes	26
Associated Families	25

Dataset Contents

Total Genome Size

132328296

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	19
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli	1
All Organisms → cellular organisms → Bacteria	4

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Ecosystem Assignment (GOLD)

Name

Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → waterfall → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → waterfall → fresh water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007033	Metagenome / Metatranscriptome	359	Y
F011084	Metagenome / Metatranscriptome	295	Y
F032666	Metagenome / Metatranscriptome	179	Y
F034582	Metagenome / Metatranscriptome	174	N
F038584	Metagenome / Metatranscriptome	165	Y
F040649	Metagenome / Metatranscriptome	161	Y
F041788	Metagenome / Metatranscriptome	159	Y
F044249	Metagenome / Metatranscriptome	154	N
F045123	Metagenome / Metatranscriptome	153	N
F051584	Metagenome / Metatranscriptome	144	Y
F054062	Metagenome / Metatranscriptome	140	N
F057782	Metagenome / Metatranscriptome	136	Y
F060938	Metagenome / Metatranscriptome	132	N
F061874	Metagenome / Metatranscriptome	131	N
F069506	Metagenome	124	N
F078344	Metagenome / Metatranscriptome	116	N
F078762	Metagenome / Metatranscriptome	116	Y
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F086424	Metagenome / Metatranscriptome	110	Y
F088087	Metagenome	109	N
F090019	Metagenome / Metatranscriptome	108	N
F099358	Metagenome / Metatranscriptome	103	N
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0066183_1000325	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6384	Open in IMG/M
Ga0066183_1001982	Not Available	2717	Open in IMG/M
Ga0066183_1004058	Not Available	1894	Open in IMG/M
Ga0066183_1009171	Not Available	1246	Open in IMG/M
Ga0066183_1009360	Not Available	1234	Open in IMG/M
Ga0066183_1015904	Not Available	936	Open in IMG/M
Ga0066183_1016096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli	929	Open in IMG/M
Ga0066183_1017309	Not Available	894	Open in IMG/M
Ga0066183_1022555	Not Available	780	Open in IMG/M
Ga0066183_1026197	Not Available	722	Open in IMG/M
Ga0066183_1026486	Not Available	717	Open in IMG/M
Ga0066183_1026977	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
Ga0066183_1033804	Not Available	629	Open in IMG/M
Ga0066183_1034229	Not Available	625	Open in IMG/M
Ga0066183_1034487	Not Available	623	Open in IMG/M
Ga0066183_1041065	Not Available	568	Open in IMG/M
Ga0066183_1042065	Not Available	561	Open in IMG/M
Ga0066183_1042823	Not Available	556	Open in IMG/M
Ga0066183_1045483	Not Available	538	Open in IMG/M
Ga0066183_1045531	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
Ga0066183_1045532	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
Ga0066183_1047724	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
Ga0066183_1048173	Not Available	522	Open in IMG/M
Ga0066183_1048344	Not Available	521	Open in IMG/M
Ga0066183_1052009	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066183_1000325	Ga0066183_10003256	F099358	MRRDEVFKALHQRLAPSNYYALDADLILVEKIPPATVYVVAHLEFKMGAEPITFTQAVYFNQMVSAPMPWRVPVYIIRAREPYDLPPKGATRLSYDYCQHARETHRYDVVEYLYADWKPDPPCVSVATIAEDIGWRELVEWERELRRARREQLAPYIDAGWQTRHETTQLQMKRIG*
Ga0066183_1001982	Ga0066183_10019821	F041788	MRKWLRVLLVIVLFPIAVLLSNHSDPVVTDERGAFVCSAARSASGIWYTAEHCLTNGRLYVDGRDTPYAHLLGDIIQIGSGARRADKGVLTADRVRAGMKVKVRIGGLSRLTEKPTYFDVETKILAVYSSADLKYVLDAPDDAGWYALVHLGAFGGCSGSGVYYRGRLIGVVVAGIAGEYTFVALIPPANVGGGTSAVQKQGADA*
Ga0066183_1004058	Ga0066183_10040583	F011084	MTQLKVRILSNGCGDCIVAAEIERGGRKDYVPAENWRELEPAALAELETQGGSVNEAGIYDCPKQLAEQARFGFELFWAQSDMRFGDALAEWRRQSLGVTDLASFANRHGVSPRTVRLLERHGRVPRRADVRRRLEQAYRLPQGFFKWVEAERGEVE*
Ga0066183_1009171	Ga0066183_10091712	F038584	TEEIKQIQKAAEELVATLHATAATEEETKTLDVISKAAAHIRQQLREGMPNASTRIKARELRAARKLMHRYVQKTSVGTNLPREYVGESFYVTRQPVIEFIQDYLRTEALEVLAEITQVRLNSFTGSPSTVGEGGAKPSMGTTPQRVNANYQKIAFTDLITDETVLSYPNIVDFLIWHGAYRLEVFLHNALITIISGIASPATLPTGIPSPQIADLLIYMRAFHDQQAAIGPRGDWPANIAIVPFPYYWRLVFGGLKTTIGDYIQLDRQLQGLTLIAHGTAQTSPTIVLNENEMEVFYLGDITVNLGRVFDGSVETNVRRLSMDLFYAPLPHAGRPVIVANTQSAINSMV*
Ga0066183_1009360	Ga0066183_10093601	F090019	RPFPLHNLAYTEFYRMNTDDFTGRTIFGLLRDFSDRFSAEIPHNIEIAYSGFMGLDRQAIEFSPAKVKTQASKLDGLASFLNRILGAARHIVRSVRVPEPMPPGNIIVGSDYFAAKIIMAEGLTGLDANAETALHQFIADRYQKKLAQVYEGVRIPFTEQDYTNLAQQGFPGVRRLRWAINSDYAEVDYEMPITLQPQKTTFIL*
Ga0066183_1015904	Ga0066183_10159041	F060938	MSCSVIALLAGCGGGSSTNPQTAEQQIVASNTNFRTRVQTILRNAAQEMGVQVSPENFACGVFTNGSDGKMSVLINAAIANTQNLTLDDLRRGADVMFCYLQTDEGYRNFLTVKIREVNNQWIAELRNLAGETATVDADVKADQAARPAKLTLVWDGRPCIDYRITPSIIIKHCITLNKLFSGRTTSGGWEDKLDSACEQLMSSVRGAMQSRSGSSFRGVVAISRDDVLAVCQLAGTASQLQLDDPTRPLGYCYIWKERNGDDLPARIFPIKLSSSNNSYAVDGAPGIGVTLEPSNL
Ga0066183_1016096	Ga0066183_10160961	F078344	EPLLEPLERKLRAKQEITLDEWAAFATQLTPMQLARAEGWIRLAGQPASHETLAPLENLVVALPALRFWVSLSPQQRQAALDGEPLLLEWMTPKQRELFLQVFSRPLPDLVGAPLLKRYVHEGNYGSLSVRIGSQGETITMTTRIGNPPPPHFRIGRSVQRIEKTLITMQSEDGSEITLEGYQTSDFLRPSSGSPRGWLLYFAVDDWQRVYILVGE*
Ga0066183_1017309	Ga0066183_10173091	F007033	MQCRCSQPLWALGIPDCHPVLRPIRRIAFETNLEESRNPASFDLVNSTDYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVGPEAASPIPIEPGTIQVRLLFPSDTTITKYEFSFDFAQSLMDFEFVPVFANAGLLNYMPRIAALLVATWNAPGLFVSVYAFYARSAGDLYIPISGLAAFLEVRDNANTLITTNFAEVMPGGYE
Ga0066183_1022555	Ga0066183_10225552	F054062	MDKLRELRWKDFCNGLDKDPPDEVQKEAEHIFFDQLFPEVVLTFFQNVSELLLLYEASLAAPGMKPIADAKFNELFKQHPIPFYESLVPVLKNLGAEPEKATFLEICAFLTTYK
Ga0066183_1024730	Ga0066183_10247301	F086424	VLFPAENIRAHVMTICNTHTNNIPYYWRLDTAKHSMLASTTYTHRVARNGRAGEILAAPAPPTSSDDTETYPNDCVIAYRYRNIFWLPHAMASTARSVNLWDSAVDSFLFWLLYGLQAAGVRPRYRLPVQIETDHPLEAVGTNPPFNHSIVTQMSILEASWDWMRDFARRKNTAIVNGVVVGTKYRRQTFTHHWHLLYSTSRTQAERDAAMRVHQILVAGHREGTTPCGVHDHTIGTNGYWGGSTAAG
Ga0066183_1026197	Ga0066183_10261972	F100012	MDREKVLQALKKAQGEYDIKDLDRFVREAWEEGDVLYAEIVAELTERAIEILFDQHFLWVHIVESEDFEEWIPDGWYSFVAVHPETGQCLTFLKDPVHSGKSRSSFRARIRSADDAVDAVTRLAELIEQNLKSRA
Ga0066183_1026486	Ga0066183_10264862	F104114	ERLRLWLSMTQDEKFAAAERELKDAIVARYDESADEWSLVRSIEDIAPSALAEVVIQTVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQALTLKKVQ*
Ga0066183_1026977	Ga0066183_10269771	F040649	METIEMLRKLNIDHPARLFAQLRAITNACDPNDYAPLEYYMQGAEIELPDGSPATGDWLLAIKVVELADDLVQHAEGNGAMRRSFRLVYLAPLETYFWGEYLWRDPVGFTIRVRWHRIPKDYNPQLDQIRQRNTDRGCSDA*
Ga0066183_1033804	Ga0066183_10338041	F061874	TASMNMGESPKNPQTSLWRRKANYVLRELVRAWNGKPYDSAVMWGLRYAFEDILHTFAKENDLPIPKLLFWFERFWERFSAYLGERVFTALDRSKLLDILLRGFPSARADLCKSLLYDQSVYGIMHLASVLFLWESGKGDRVLCYKRDKWPMGYYESLEVAPLDSFIICEVKRMLNERTES*
Ga0066183_1034229	Ga0066183_10342292	F088087	MKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEQFIAGGDE*
Ga0066183_1034487	Ga0066183_10344871	F084856	FVLYFHEDIKPMERGDAMSGLSDLMIVTHLYTKEHAEALSQALPEWRKLAPSSQIIVGYYQSRFQPSDFSNLMQDAAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAIPKEWFIGASGSLLQWFESYAIIGRYKQPRILVADAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGY
Ga0066183_1041065	Ga0066183_10410652	F057782	PYTLSPLLKGGEGRGEGGSYTHVPYPFGTLLVTLYHSKSKAFLM*
Ga0066183_1042065	Ga0066183_10420651	F069506	QQTFTDEQIKQAIEEVWQELLQEADAEDYSLEEYLEDYRKYWDDPDFPNDIPEIVVRTVERLIGKTLAWYCELGRDPAGFTGEYSFIVVDPKTQKCLTFRQYTSDGINIHYFLSVTGTVVYYEDIIRLVNKLISYISPALNS*
Ga0066183_1042823	Ga0066183_10428231	F078762	PKGRWPPPKKKVYNGKWYKGGIEQGNVLSLYEVRGESLLRAFYMCSRHMYPLSQLNKKPPSTSDAAKAFNTNTATPSAATE*
Ga0066183_1045483	Ga0066183_10454832	F044249	MTKRDAILALLGASLTVVAEKYIVVLAALIVLGSLANFLGWVHALVSGEGCKAVKVMQGMARLVFYLVFYVALLVALEKVASYLIPPLLSVAIIYEASLALKKAIQLNIVPAGLVRQLT
Ga0066183_1045531	Ga0066183_10455311	F032666	LPADQVGIYTLFLSVHPDQTWLLGGPNTSPRWSTLSFSITYDSNYIDFVFRDPNDGSDVLVSELPEGQGFSAYISSNPPAAGVAAGLVNARAGTNVTVTFTLAATANVNGLTSPPAARGYLRDWFQNTYDGELLRVKVNGTAIAALSGQTYSVSPGVPEGNIIIQVSPRDESRDVIVD
Ga0066183_1045532	Ga0066183_10455321	F032666	LPADQVGIYTLFLSVHPDQNWLTGGPNTSPRWSTLGFSFTYDSNYIDLVFRDPNTGADVFVSTLSVGAVFSPYIAANPPASGVAAGQVLAKDGTNITVSFALAATSNVNGLTSPPAARGYLRDWYQNVFDGELLRMKVNGPAIATLPNQTYSVSPGDPRGNIIIQVSPRDESRDVIVD
Ga0066183_1047724	Ga0066183_10477241	F045123	YGNRRLYADVMLFQGDTPLVVVEVEGNARQQREGYEEARLKGAAWNLENPVPLLWVAAGNQDTLYQLQPSQSSIRYAPLEGKTPAELLVPARLLEAIGDYLRHMETEAGQELRYRDALQRALAESCGNSAHDKFRDWLDALTGMRVRKRLPTAVREAQQMVRQVRQSGQPNFALA
Ga0066183_1048173	Ga0066183_10481731	F086364	MEREKIIAALETAFAEISGAEYEDEPETFAKFLESFKKFRDPDFPVYWIPWTVEEAVEALTGRKFGWHEDAFKDEWNYTGEFGFVCVDPETLRCLTAERTDERCTVSVAFPILSIDDAVKVVEYFLQLVQQA*
Ga0066183_1048344	Ga0066183_10483441	F034582	LPAWTLLDAGSVDPTLRQYRYSELEITPKPPEANIIYVEGATAPSKEGERLVVVLVNEDSLTEPDSLDYLGRYKLLRVQADTLSDLDAAGRLAERLYDAAARHATEAQVRLSLPPVYDTALLELLSPPRRVQVMEGSNLLLDGWVKRATLTASGGSQPRAELLLHISTRYAGD
Ga0066183_1052009	Ga0066183_10520091	F051584	VTITESALQRVLDVLYDNLADIIANKPLVYNDCPLPEAYHFGLPDLRRVSAMPIVAVELDSETLATRTLGGVGVGRRERVIPVMVVIAHAHREEERLMRQLIQLCDAVVQALERVSQSEFWLIQEVGLVDFSPPIEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004089: Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences