3300003977: DCM

Overview

Basic Information

• IMG/M Taxon OID: 3300003977
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114263 | Gp0110091 | Ga0064346
• Sample Name: DCM
• Sequencing Status: Permanent Draft
• Sequencing Center: 454 Life Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 286497271
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Eukaryota → Haptista	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Chlorophyll Maximum
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Deep Chlorophyll Maximum

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: spain
• Coordinates
  • Lat. (^o): 38.06851
  • Long. (^o): -0.23199
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026121	Metagenome / Metatranscriptome	199	Y
F030973	Metagenome / Metatranscriptome	183	Y
F046986	Metagenome	150	Y
F051454	Metagenome	144	Y
F097516	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0064346_10004849	Not Available	534
Ga0064346_10009886	Not Available	537
Ga0064346_10074326	All Organisms → cellular organisms → Eukaryota → Haptista	502
Ga0064346_10881233	Not Available	520
Ga0064346_10936200	Not Available	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0064346_10004849	Ga0064346_100048491	F046986	KMSARFNISIRTGHDDYKRAMQLLREEQQGTREELLNQLQALRLATVQRALKRGHYQTVATLLGDMGRVIGEAAPEQLALQVPTLDIRIENENQSQ*
Ga0064346_10009886	Ga0064346_100098862	F026121	MMTTEEMLKKEAMRLRMEKLRAKRKPPKLVNVHHTVKALSDDNELSYTNVKKWIKTQEGI
Ga0064346_10074326	Ga0064346_100743261	F030973	MYQKRMQGEWNAGMLGSRNYSAVRLSEGRHWKGNLYGTTINDQHQGHRNYDCPHIFSKGPEPKFENMDHAMKHKSVYLGFYGN*
Ga0064346_10881233	Ga0064346_108812331	F051454	MIVIESVVNFYINNVGFPTMTINEFRNNHCGRGAVPPPPPLQLRGELDSTGDKGYSFVRDCSTVTGYFIIANESYALAA*
Ga0064346_10936200	Ga0064346_109362001	F097516	MVINSQLAPCQQSYRITLDLTVTEDFNPHQIDFRRVFDLSEWESINTHIEEL*