3300003972: Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant

Overview

Basic Information

• IMG/M Taxon OID: 3300003972
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114039 | Gp0109960 | Ga0064067
• Sample Name: Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant
• Sequencing Status: Permanent Draft
• Sequencing Center: Sao Paulo State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 180002460
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Composted Filter Cake Microbial Communities From Nova Europa, Brazil, From A Cane Sugar Milling Plant
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Filter Cake Produced In Cane Sugar Milling Plant → Composted Filter Cake Microbial Communities From Nova Europa, Brazil, From A Cane Sugar Milling Plant

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Nova Europa, Brazil
• Coordinates
  • Lat. (^o): -21.818963
  • Long. (^o): -48.614275
  • Alt. (m): N/A
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005784	Metagenome / Metatranscriptome	390	Y
F006009	Metagenome / Metatranscriptome	384	Y
F007999	Metagenome	341	Y
F044018	Metagenome / Metatranscriptome	155	Y
F044526	Metagenome	154	Y
F045843	Metagenome / Metatranscriptome	152	Y
F088555	Metagenome	109	N
F104908	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0064067_1006112	All Organisms → cellular organisms → Bacteria → Proteobacteria	19139
Ga0064067_1031001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1064
Ga0064067_1034182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	632
Ga0064067_1038700	Not Available	3509
Ga0064067_1046303	Not Available	1042
Ga0064067_1108496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	1453
Ga0064067_1109565	All Organisms → cellular organisms → Bacteria	1537
Ga0064067_1128086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	601

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0064067_1006112	Ga0064067_100611218	F044018	MFAISRTTQNAVCMILSAVIVSISLSLGALAAERAAHDGYTVTITQLQ*
Ga0064067_1031001	Ga0064067_10310012	F045843	MCLADLMGSREVITAAATAEVPQNKPAICGTVTLHCIDGDETLRLSMPMLDALLLLNSLRAIEEEFALQGWSAQIGCSANAMQEIAAELQQFADEMAVPSTALN*
Ga0064067_1034182	Ga0064067_10341821	F005784	FDGDAITAEDGCEIHITNSRIVAKGVGVTAHAANVHIRNSQIEGDSASVQASGGAQVYLHSSTFKGLPRRMDTATVHDMGGNVWN*
Ga0064067_1038700	Ga0064067_10387005	F104908	MDCQRPTKNKETGKWEVWDFAYEENGERYYELHEFWEYKDAIEFWKLRNPKQK*
Ga0064067_1046303	Ga0064067_10463031	F044526	AARGVFPPAGCKNEAAGREPIQVVLQAEKGKPVTLNIPRGYIEQPKDPEGVLPNVVLRIAAKDFSDAESFVPNSEVRVLIEPYASAVDAAHERHAAALRKHRSSVEALKKSAELSKGGLTAYTYPNGNEDAEAYYLKSKDGNVFVECRRSVCRAFRTWKEKRVHVRFDYQPVSTSDVEQVSAAVDRMLQTF*
Ga0064067_1108496	Ga0064067_11084962	F006009	MTHGEQKALWRGVAAGTMVGLAIGGMIALVIATKPGFFAALLQ*
Ga0064067_1109565	Ga0064067_11095652	F088555	MALRMYFDETVSSLVRDDISPTLGSPDSYEGPGTGGMVQRKLYLYSDNFQRTYSQVQLTSLNSDSQVQIRYAVDQNGSPGTWQTTLDLPSGNYQTPVPVWVQVTFAPTDEPTLRTDLRHWLQWLEAVAG*
Ga0064067_1128086	Ga0064067_11280861	F007999	MDPTHQRGLKARENLVNALRECGELADAVEDFDGAELLEVLDYLDSLRFVMAESGQLLAGVVRGEMSR*