3300003968: Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39860

Overview

Basic Information

• IMG/M Taxon OID: 3300003968
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113966 | Gp0109822 | Ga0063588
• Sample Name: Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39860
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Michigan
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 46624207
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Harmful Algal Blooms In Lake Erie
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → glacial lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079646	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0063588_100100	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	60544

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0063588_100100	Ga0063588_10010036	F079646	MTNFVSRCLVAPLSALAFAALLAPSTASAQSGKWVGTVNQIRTAGGSADFTIDPRNEKQSRVKVTVRNVNRDMRIAWDIVEGQCRDNGAPIAPQATFTQIQSQMDGGGTATANVPKLVSGKNYYVRIFDPQNSPTDDNVWGCANISEKP*