3300003953: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_80_13INC

Overview

Basic Information

• IMG/M Taxon OID: 3300003953
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0109932 | Ga0064035
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_80_13INC
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1957109
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Marker 33 diffuse flow vent, Axial Seamount
• Coordinates
  • Lat. (^o): 45.9332
  • Long. (^o): -129.982268
  • Alt. (m): N/A
  • Depth (m): 1516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054846	Metagenome / Metatranscriptome	139	N
F074867	Metagenome / Metatranscriptome	119	N
F078696	Metagenome / Metatranscriptome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0064035_10694	Not Available	623
Ga0064035_11059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1057

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0064035_10694	Ga0064035_106941	F054846	QGRESRKSLSEHDTERKPERVPMYAQRTMIDATLIPKGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*
Ga0064035_11059	Ga0064035_110591	F078696	MKLWSSAVTYLNVQPSEAWNLTPFEFLALWDTHLEKMEISTGKAYTRPMTMDEFNELSDF
Ga0064035_11059	Ga0064035_110592	F074867	MSNRGITDIMLNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKAGDVVSIIQVCAVPANGRKFPNWWNRDGVGEAVISAGLVGITTSVTHFLAKALTAGTETDIKTVGSESDEKK*