3300003950: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_13H6

Overview

Basic Information

• IMG/M Taxon OID: 3300003950
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0109929 | Ga0064032
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_13H6
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1191941
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Avibacterium → Avibacterium paragallinarum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Anemone diffuse flow vent, Axial seamount
• Coordinates
  • Lat. (^o): 45.933
  • Long. (^o): -130.014
  • Alt. (m): N/A
  • Depth (m): 1542

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011936	Metagenome / Metatranscriptome	285	Y
F025488	Metagenome / Metatranscriptome	201	N
F051069	Metagenome / Metatranscriptome	144	N
F075867	Metagenome / Metatranscriptome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0064032_10074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Avibacterium → Avibacterium paragallinarum	545
Ga0064032_10577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	770
Ga0064032_12121	Not Available	640

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0064032_10074	Ga0064032_100741	F011936	ETRLQKLENGHDMLSRDYSRLNDAIVKISESLMALVVIQEQNKSIMQCMEHQSTTIEKLDARIDAIELQMPQLVESRQWLMIGLGLIVTAVIVALIALVIK*
Ga0064032_10577	Ga0064032_105772	F051069	MAYRVSISSTELVTRAEVVAYAKIENTDENSIIDALITSSREELEKLLKIPLITQVLAQTYDSFIEPVYAPMIPLTSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPSLQFDGFKITFTYTVSAIDAALKTAIMELTSYRFYNRGNLEAAKIPASVLSMVGHLRVFSV*
Ga0064032_11090	Ga0064032_110901	F025488	MAYVSRGFIPQTSLASNLGFTRPMYIPAGNGTATALYDIVKVSTSGSTADTAGIPAGLMGCVRVSDKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSIDTVTGTSGMQISSATLAGSPGMF
Ga0064032_12121	Ga0064032_121211	F075867	MNPALKPSTKHFLQYDAATFEHEGFKTLNGRISQLALEPRFWSVSVKVITENFEGTEKIKDHFNFKTSERCKLSDLRDQVKREVLDKDDYLPVCTQCLVTARVMM*