3300003907: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-10-D

Overview

Basic Information

• IMG/M Taxon OID: 3300003907
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088370 | Ga0008111
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-10-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64688348
• Sequencing Scaffolds: 15
• Novel Protein Genes: 19
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010514	Metagenome	302	Y
F038929	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26058J51888_1004115	Not Available	1414
JGI26058J51888_1005753	Not Available	1080
JGI26058J51888_1007913	Not Available	867
JGI26058J51888_1008094	Not Available	853
JGI26058J51888_1009989	Not Available	738
JGI26058J51888_1010468	Not Available	714
JGI26058J51888_1010754	Not Available	701
JGI26058J51888_1010832	Not Available	698
JGI26058J51888_1012822	Not Available	621
JGI26058J51888_1013260	Not Available	608
JGI26058J51888_1014084	Not Available	585
JGI26058J51888_1014286	Not Available	579
JGI26058J51888_1014507	Not Available	574
JGI26058J51888_1014854	Not Available	565
JGI26058J51888_1016174	Not Available	536

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26058J51888_1004115	JGI26058J51888_10041151	F010514	VPNSVHTRPGQENSDKNSKKIQKIIKPLPGIIFSQNGMR*
JGI26058J51888_1005753	JGI26058J51888_10057531	F010514	LLKRDEIGRKRENKILYPISIHTRPGKENSEKNSKRIQKFIKPLPXNIFSQNWMR*
JGI26058J51888_1007913	JGI26058J51888_10079131	F010514	NILVPNSVHTRPGQENSENNSKKIQKIIKPIPDIIFTQNGKI*
JGI26058J51888_1008094	JGI26058J51888_10080942	F038929	FKTKRVRTGRKIENEKNFLPIRSNPTRVRKFKNKCKKILKIKKHHPEFISRPYGPG*
JGI26058J51888_1008470	JGI26058J51888_10084701	F010514	ILVPNSVHTRPGQENSEENSKKIQKIVKPLPGIIFSQNGMR*
JGI26058J51888_1009989	JGI26058J51888_10099891	F010514	GRKSENKILVPNSVHTRPGQENSEKNSKKIQKIIKPIPGIIFSQNGKI*
JGI26058J51888_1010468	JGI26058J51888_10104681	F010514	KILVPNSVHTRPGKKNSEKNSKKIQKIIKPHLSIIFSKNGMRYAEKEKKKI*
JGI26058J51888_1010754	JGI26058J51888_10107541	F010514	LPKRDEIGRQSEHKILVPNSVHTRPGKQNSEKNSKKIQKIIKPIPGIIFSQNGTRLADKMNTKF*
JGI26058J51888_1010832	JGI26058J51888_10108321	F038929	VRTGRKIENKKNFLPIRSNPTRVRKFKYKCKKILKIKKHHPGFISRRNGPRQAEK*
JGI26058J51888_1012822	JGI26058J51888_10128221	F010514	MGQKKENKILVPNSVHTRQVQENSEKNSKKIQKIIKPLPDILFSKNGMR*
JGI26058J51888_1013260	JGI26058J51888_10132602	F038929	MQKNFKNLKTSSRLHFMMIRVRKGRKIENKKNFIPIRSNPTRVRKFKNKCKKILKITKHHPGFISRPNGSGQAEK*
JGI26058J51888_1014067	JGI26058J51888_10140671	F038929	DQDRMKIENQNNFLPIRSNKTQVRKFKNKXKKILKIKKHLPGFISRRNGSGPAEI*
JGI26058J51888_1014084	JGI26058J51888_10140841	F038929	KRVRTGRKIENKKIFIPIRSNPTRVRKFKNKCKTSLAIKKHHPGFISGRNGSGQAKK*
JGI26058J51888_1014286	JGI26058J51888_10142861	F010514	DRNREKKIIVPNSVHTRPGQENSEKNSKKIQKIIKPLPCIIFSQNGMR*
JGI26058J51888_1014507	JGI26058J51888_10145071	F038929	MKRVRIGRKIEKKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFIS*
JGI26058J51888_1014854	JGI26058J51888_10148541	F010514	ENNILVPNSVHTRPGQENSENNRKKIQKIIKPILGIISSPNGMR*
JGI26058J51888_1016024	JGI26058J51888_10160241	F010514	KKKKILVPNSVHTRPGQENSEKNSKKIQKTNKPLSGINFSQNGMR*
JGI26058J51888_1016174	JGI26058J51888_10161741	F038929	KTSSRLHFNMKRVRIGRKIEKKKNFILIRSNPTRVKKFKNKCKKILKIEKYHLGFISRRNGSGQATK*
JGI26058J51888_1016676	JGI26058J51888_10166761	F010514	LPERDEIGRNREKKIEVPNSVHTRPGQENSEKYSKKIQKIIKPFFGIIFSKNGMR*