3300003863: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_30_13L

Overview

Basic Information

• IMG/M Taxon OID: 3300003863
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0109403 | Ga0062507
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_30_13L
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2829880
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Marker 33 diffuse flow vent, Axial Seamount
• Coordinates
  • Lat. (^o): 45.9332
  • Long. (^o): -129.982268
  • Alt. (m): N/A
  • Depth (m): 1516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025488	Metagenome / Metatranscriptome	201	N
F074867	Metagenome / Metatranscriptome	119	N
F082613	Metagenome / Metatranscriptome	113	N
F091607	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0062507_101025	Not Available	515
Ga0062507_102232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	639
Ga0062507_104188	Not Available	553

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0062507_101025	Ga0062507_1010251	F082613	GPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTIDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0062507_101381	Ga0062507_1013812	F025488	MAYVSRGFIPQTSLASNLGFTRPMYIPAGNATATALYDIVKVSTSGSTVDTAGVPAGLMGCVRVSDKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSIDTVTGTSGMQISSATLAGSPGMFRLQQRSFAVDNAAIAGTNTKWLVTFNTHQFKATA*
Ga0062507_102232	Ga0062507_1022322	F074867	MSSRGITDIILNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKTGDVVSIIQVCAVPANGRKFPNWWNRDGVGEAVISAGLVGITTSVTHFLAKAL
Ga0062507_104188	Ga0062507_1041881	F091607	MSLELQISELNATIKTLNENILLLLGGKDQHSKVECSPIEPANLGQTQQQTFLPEVAKSDEYTREQLQSFCLEATKRNAANRDIIKAIMLSNFEARKTGDLADNQINLCYSMI