NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003825

3300003825: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M



Overview

Basic Information
IMG/M Taxon OID3300003825 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0110170 | Gp0088255 | Ga0007793
Sample NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size27720094
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Alkalihalobacillus → Alkalihalobacillus alcalophilus1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomefreshwater lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014767Metagenome260Y
F015489Metagenome / Metatranscriptome254Y
F023091Metagenome / Metatranscriptome211Y
F027555Metagenome194Y
F055311Metagenome / Metatranscriptome139Y
F074841Metagenome / Metatranscriptome119Y
F085861Metagenome / Metatranscriptome111Y
F088111Metagenome / Metatranscriptome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0007793_100153All Organisms → cellular organisms → Bacteria7513Open in IMG/M
Ga0007793_100183All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes7064Open in IMG/M
Ga0007793_100662All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae3629Open in IMG/M
Ga0007793_101917All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1720Open in IMG/M
Ga0007793_102945All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium1215Open in IMG/M
Ga0007793_105552All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium758Open in IMG/M
Ga0007793_105642All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Alkalihalobacillus → Alkalihalobacillus alcalophilus749Open in IMG/M
Ga0007793_107456All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium626Open in IMG/M
Ga0007793_107968All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes601Open in IMG/M
Ga0007793_110911All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0007793_100153Ga0007793_1001533F085861MSINQAASKNFGNLCCRAWTHQGNPARKKKIGIMLVTIGLIWLGARMGLLDFSWLQAVYFWPAVLIFLGAWMVYKGSMRGISRTSDNKTKEV*
Ga0007793_100183Ga0007793_1001831F088111SYTKLWAFLDANKFDLYACGHSHLYSRKTIDSSVLPNPQTTPPTPSWQNNVVQLLNGTCGTHIESTVIDPAIRISWNVHNDSLTYYFSVIDISGSTVTVNSYRGNTGAYSVFDTFTINK*
Ga0007793_100662Ga0007793_1006624F027555MVRLARRYGLSPVAQVLRVNYTGLKHHLVASSTPQAPRADAIAAGFVEVPIRACPGGPQWVIELEDRDGSKLTLRLAQTDRAAALALAQGLWRQRS*
Ga0007793_101917Ga0007793_1019173F055311MAEDLLDYWVRLIKTIFPANAWINSHFSNNDHLIQIDWKLQNDSENPTKRSKKIEIIIKEGAIEDYLDKNKKDRELSDIMLKEFICERYNHFISGNDIHANQYASTEKWLISRDVLNCKPSLDTPPRDQVKSVYQ*
Ga0007793_102945Ga0007793_1029452F074841MKSMSAKTKKEVLKDLEMYFGRPPYDSEHVRQHLTSGLFEQQALMKYGFTPIELMIGLEQVRLSKKQKVEALKDLKMYFGAPPVSRKALDQRLTSGLLEAQILAKYLMTVEELMKEVGYKVSK*
Ga0007793_105552Ga0007793_1055521F088111LYYQHSDTGFLLINQQQFQAVFSENPSNGPASYEHLAYSFTSPGGSCFFATLDPYFLTHDSVPDGLGGNIEGPQMSWLRAQVAKTKAIHKFIFIHTPYYYVSNDTTELSTVSPSFTRLWAFLDSNKFDLYACGHSHLFARRTIDSSVLPNPQTVPQTPAWKNNVVQLINGTCGAGGGGGTVDPGVRVAWNVHDANKTYYFSVFDINGSTVTVNSYGGYKGAYSLIDTFTITR*
Ga0007793_105642Ga0007793_1056421F015489MVHKHGRYKRYADPAGTKKRNELEFIQRYLCCPCGLSFSVLLPHRLPYRPIRAERLQGDFDQRAGIQAQGLDPPPGAVEAGCLKRAWSALSARVATLKDAFGQLVDSKVSDGISLWKALRQSFDSVSKMLCFLSQHHRISLLGDYRCLQPPA*
Ga0007793_107456Ga0007793_1074561F088111VMDCYYVTKDTQKINMGGHIDTTQMNWLKTQVAQTSALHKFLFIHVPYYYVDNDSTEASEADTTITTLWSFIDTHKFDFYACGHSHLYARRTIDPSLVPYPQPVHPVPAWSGNVVQLLCGTCGAGSGGGYIDPTVRAEWDVHNAKKTYYYTVIDVSGNTTTVNSFQGYTAQHTVFETFTITK*
Ga0007793_107968Ga0007793_1079682F023091MAIFNKNTLTQVSGFDNPIIAGELVYNQKTFWNLTMQASDGTPISLVGATIDASIIRRQLSNIQDTRYGLTFDIADYTVSTPTAISLTISNRVDANGTFTLTIDESAWSVLTSDTQLDISATSPVGFS
Ga0007793_110911Ga0007793_1109111F014767MEPGKLCVMRQGPGGPYYSLQCREGGKPVARYVPREEADLVVSHTANYERFQTLVGQYVALVAAQTRAEREAGSKKKIPRPSSSWPKMRKSSN*

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