3300003825: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M

Overview

Basic Information

• IMG/M Taxon OID: 3300003825
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110170 | Gp0088255 | Ga0007793
• Sample Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27720094
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Alkalihalobacillus → Alkalihalobacillus alcalophilus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014767	Metagenome	260	Y
F015489	Metagenome / Metatranscriptome	254	Y
F023091	Metagenome / Metatranscriptome	211	Y
F027555	Metagenome	194	Y
F055311	Metagenome / Metatranscriptome	139	Y
F074841	Metagenome / Metatranscriptome	119	Y
F085861	Metagenome / Metatranscriptome	111	Y
F088111	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0007793_100153	All Organisms → cellular organisms → Bacteria	7513
Ga0007793_100183	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	7064
Ga0007793_100662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	3629
Ga0007793_101917	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1720
Ga0007793_102945	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1215
Ga0007793_105552	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	758
Ga0007793_105642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Alkalihalobacillus → Alkalihalobacillus alcalophilus	749
Ga0007793_107456	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	626
Ga0007793_107968	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	601
Ga0007793_110911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007793_100153	Ga0007793_1001533	F085861	MSINQAASKNFGNLCCRAWTHQGNPARKKKIGIMLVTIGLIWLGARMGLLDFSWLQAVYFWPAVLIFLGAWMVYKGSMRGISRTSDNKTKEV*
Ga0007793_100183	Ga0007793_1001831	F088111	SYTKLWAFLDANKFDLYACGHSHLYSRKTIDSSVLPNPQTTPPTPSWQNNVVQLLNGTCGTHIESTVIDPAIRISWNVHNDSLTYYFSVIDISGSTVTVNSYRGNTGAYSVFDTFTINK*
Ga0007793_100662	Ga0007793_1006624	F027555	MVRLARRYGLSPVAQVLRVNYTGLKHHLVASSTPQAPRADAIAAGFVEVPIRACPGGPQWVIELEDRDGSKLTLRLAQTDRAAALALAQGLWRQRS*
Ga0007793_101917	Ga0007793_1019173	F055311	MAEDLLDYWVRLIKTIFPANAWINSHFSNNDHLIQIDWKLQNDSENPTKRSKKIEIIIKEGAIEDYLDKNKKDRELSDIMLKEFICERYNHFISGNDIHANQYASTEKWLISRDVLNCKPSLDTPPRDQVKSVYQ*
Ga0007793_102945	Ga0007793_1029452	F074841	MKSMSAKTKKEVLKDLEMYFGRPPYDSEHVRQHLTSGLFEQQALMKYGFTPIELMIGLEQVRLSKKQKVEALKDLKMYFGAPPVSRKALDQRLTSGLLEAQILAKYLMTVEELMKEVGYKVSK*
Ga0007793_105552	Ga0007793_1055521	F088111	LYYQHSDTGFLLINQQQFQAVFSENPSNGPASYEHLAYSFTSPGGSCFFATLDPYFLTHDSVPDGLGGNIEGPQMSWLRAQVAKTKAIHKFIFIHTPYYYVSNDTTELSTVSPSFTRLWAFLDSNKFDLYACGHSHLFARRTIDSSVLPNPQTVPQTPAWKNNVVQLINGTCGAGGGGGTVDPGVRVAWNVHDANKTYYFSVFDINGSTVTVNSYGGYKGAYSLIDTFTITR*
Ga0007793_105642	Ga0007793_1056421	F015489	MVHKHGRYKRYADPAGTKKRNELEFIQRYLCCPCGLSFSVLLPHRLPYRPIRAERLQGDFDQRAGIQAQGLDPPPGAVEAGCLKRAWSALSARVATLKDAFGQLVDSKVSDGISLWKALRQSFDSVSKMLCFLSQHHRISLLGDYRCLQPPA*
Ga0007793_107456	Ga0007793_1074561	F088111	VMDCYYVTKDTQKINMGGHIDTTQMNWLKTQVAQTSALHKFLFIHVPYYYVDNDSTEASEADTTITTLWSFIDTHKFDFYACGHSHLYARRTIDPSLVPYPQPVHPVPAWSGNVVQLLCGTCGAGSGGGYIDPTVRAEWDVHNAKKTYYYTVIDVSGNTTTVNSFQGYTAQHTVFETFTITK*
Ga0007793_107968	Ga0007793_1079682	F023091	MAIFNKNTLTQVSGFDNPIIAGELVYNQKTFWNLTMQASDGTPISLVGATIDASIIRRQLSNIQDTRYGLTFDIADYTVSTPTAISLTISNRVDANGTFTLTIDESAWSVLTSDTQLDISATSPVGFS
Ga0007793_110911	Ga0007793_1109111	F014767	MEPGKLCVMRQGPGGPYYSLQCREGGKPVARYVPREEADLVVSHTANYERFQTLVGQYVALVAAQTRAEREAGSKKKIPRPSSSWPKMRKSSN*