3300003816: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul07

Overview

Basic Information

• IMG/M Taxon OID: 3300003816
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110170 | Gp0088307 | Ga0007845
• Sample Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul07
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3018365
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F067351	Metagenome	125	Y
F069657	Metagenome / Metatranscriptome	123	N
F088232	Metagenome / Metatranscriptome	109	Y
F094773	Metagenome	105	N
F100448	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0007845_100106	All Organisms → Viruses → Predicted Viral	1021
Ga0007845_100181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium	851
Ga0007845_100416	Not Available	626
Ga0007845_100656	Not Available	541
Ga0007845_100743	Not Available	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007845_100075	Ga0007845_1000751	F094773	MDNKEFINKVLEEDKKKETDPSRIIALEIFNLLAPKAEQEASVILAGVSMVLATMAVEMGIEEEKAVYAFRRSYAN
Ga0007845_100106	Ga0007845_1001061	F000684	MTLHGYTYQIGDLFTTSKTGVTGRINSFSPVSNKVTRVGLTLANGSKRIAMV
Ga0007845_100181	Ga0007845_1001811	F067351	MSWVKYWFAVFLVELAIWSYVIYLHFEIKELEKIQVPKPKFDKEHKVLVRTKKDIVRG*
Ga0007845_100416	Ga0007845_1004161	F069657	MSDSSTPQGRKKRRPRVPPPPTYIEGWGEGQTYGPPWRNPFPGGWGYPWWRFERPFDRPYELVSPEWSSRPTPTYRKPSNLFWEPQGGQSFCSTSGAGSTISSSSGQVGLPRKKIRIEEVIDSDPQPESVSSNQASQPNQIGK
Ga0007845_100656	Ga0007845_1006561	F088232	MANTQAYFGFTQYQGGAGGAPTFAQSVRRIASSSGAIYTGDPVMPAVSSANGYIVQASPGTTTLAGIF
Ga0007845_100743	Ga0007845_1007431	F100448	MSNHRRNTSVPFAQQIEQAKRVFEPRIFSRGSIAYLGFEDSTSKILRALQYMPISALCKTPLEGANSXFMFCXYQILQQLTLLTECEPXHPKAVLA