3300003799: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE09Aug07

Overview

Basic Information

• IMG/M Taxon OID: 3300003799
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110170 | Gp0088283 | Ga0007821
• Sample Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE09Aug07
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2371654
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. AK-YN10	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003495	Metagenome / Metatranscriptome	483	Y
F016635	Metagenome	245	Y
F022104	Metagenome	216	N
F041562	Metagenome / Metatranscriptome	159	Y
F046152	Metagenome / Metatranscriptome	151	N
F080927	Metagenome / Metatranscriptome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0007821_10133	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	751
Ga0007821_10258	Not Available	620
Ga0007821_10302	Not Available	595
Ga0007821_10351	Not Available	569
Ga0007821_10387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. AK-YN10	554
Ga0007821_10396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	550
Ga0007821_10495	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007821_10133	Ga0007821_101331	F003495	SMKENKEKKIKNCDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGR*
Ga0007821_10258	Ga0007821_102581	F046152	MTISRRKFLTGLTALVATPAVIRYSGVMAVNAAQATPFATVTGLDLSGQTVVHKFWEPTNANLFAGTQEFANMVRVTSWDYGVPSRDMLPKSNHWQGTVGLDDRTVDQIIADRILKQEQQRKAWLDDPAWTIYGTVGPDTSCTTQF
Ga0007821_10302	Ga0007821_103021	F016635	MLYAVFDNFHALANPIRQDILRGGAENRRFCXFLTLEFEFLMTYEVSR
Ga0007821_10351	Ga0007821_103511	F041562	MADTAFSGPIIVFGQNPTQPSDYNPDLGSSLFYAGGGILDPRQPFTYLPGEAQSAQDFGWYGFSDIVSFTGVP
Ga0007821_10387	Ga0007821_103871	F022104	MTNVDYTTLAYNTIFTLGATATGVWYVFKHGVRNVLKDFEQESREDIKTIKHEVLPNSGGSLNDAIRKQVIPMVETLVERQQDISVEVATLNGKFEQHIREHNA*
Ga0007821_10396	Ga0007821_103961	F080927	MAEALPPEVERLASFGKALEGTINITQDDIDEVPSDDGSPSASLEALPSDKVKLLEALKKRRTYLYRLCTRLRREAQANENVSSERWNQLTEGAMRHLVDLNTIESEIAEILKPTKRDREKTKGYKKNLRELIATFGEFRDSQLQKETAKRKAEQSEKEV
Ga0007821_10495	Ga0007821_104951	F080927	SKLRLDKSAMAEALPPEVERLASFGRALEGTVDITQEDIDDVPSDEGSPSAGLEALPPAKADLLVHLKKKRTYLYRVCTRLRKETVANENVSSVRWNQLAEGAMKHLDDLTTIENEIAEILKPSKKDKEKTKSYKRNLREAIAIFGEFRDSRLQIEQQXKEI*