3300003742: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_80_13L

Overview

Basic Information

• IMG/M Taxon OID: 3300003742
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0109411 | Ga0062515
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_80_13L
• Sequencing Status: Permanent Draft
• Sequencing Center: The Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1474619
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Marker 33 diffuse flow vent, Axial Seamount
• Coordinates
  • Lat. (^o): 45.9332
  • Long. (^o): -129.982268
  • Alt. (m): N/A
  • Depth (m): 1516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010914	Metagenome / Metatranscriptome	297	Y
F025488	Metagenome / Metatranscriptome	201	N
F042865	Metagenome / Metatranscriptome	157	N
F051872	Metagenome / Metatranscriptome	143	N
F082613	Metagenome / Metatranscriptome	113	N
F101016	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0062515_10187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1203
Ga0062515_10780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972
Ga0062515_11130	Not Available	717
Ga0062515_11679	Not Available	806

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0062515_10187	Ga0062515_101872	F082613	MRPCHYSYTPEAAATNSISLSQAVVGAAALTQTGTYGVNGFPSELAWNITITSSANISGVNLTIVYLDAQLNQQSIVVAGPNATTKDAGIYATKIISVTTSASDSNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0062515_10511	Ga0062515_105111	F025488	MAYVSRGFIPQTSLASNLGFTRPMYIPAGNATATALYDIVKVSTSGSTVDTAGVPAGLMGCVRVSDKDDVPCGVIVGFIADPDYLNQTCRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSIDTVTGTSGMQISSATLAGSPGMFRLQQRSFAVDNAEIAGTNTKWL
Ga0062515_10780	Ga0062515_107802	F010914	MIYNILVEQNGKFVTTGETVDCEFEETQAVIDELQLEHGCCCALEAVSE*
Ga0062515_11130	Ga0062515_111301	F051872	TTADKAKALGWNPDKDEFKAKTGKEWSTAGQYLRQREMADEIHKRGQELKQLRRDMDRRLKNVEQPIANIAQNEHKQRLDNVSLSLKQAAIDQDFDAIDALLAERDKLLKAEPVAKQEEPLAIDDTNDDGETQEQLQAAAQKWIADNPWYNKLTQAGRDQAAKLEAEYRAKVDCTTEEALAYVAQEMGKDPIVAVLKGKLKSPDVTPRTAERPRVASASESSLDPASRNIYNKMISQG
Ga0062515_11239	Ga0062515_112391	F101016	DVEVMYNDAQKRQADQLLEELTALPAAIPTSEELMNEQSIDSGEGQQGGLPPMVEQSSDQGDDGAIDQRVDEPQQPNEPPQSIDIGEGTLPIGQGAGIDGGVGLQEPANGDMQEGV*
Ga0062515_11679	Ga0062515_116791	F042865	MSLRVPDYETFLAADDFNKRIWWSFMQSVVNDLPLNGNVAPENTIRANKSCLYVESTGGTAVLWFNPNGNGSATGWIVK*